PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982676.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 618aa MW: 68045.6 Da PI: 7.2174

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	262	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C +aHg XP_024982676.1 262 PCPEFRK-GSCVKGDACEYAHG 282 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MCKGSKGKFC STNLVMEGDK IQENKNGFFL KCSILLELAA IDDVAGFVFE VERKGMSLDE 60 VSFWYGRRNG SKGKMGFEER TPLMIASVYG STHVLKYLIG TQKVDVNKAS DSDGATALHC 120 AAAGGSPMSV ETVKLLLEAC ADPNLTDDND NKPVDLIARG IKSSKRKALE MLLKGLTIEE 180 GSDKEESEET EIITAKKEYP IDVSLPDIND GVYGTDEFRM YMFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPRKHQYSC VPCPEFRKGS CVKGDACEYA HGVFESWLHP AQYRTRLCKD 300 ETGCARKVCF FAHKVEELRP LYASTGSAVP SPKSGSVSSM EMGSMSPLGL GSTPPMSPSI 360 APVNGNMWQN KFVHLTPPAL QLSGSRLKTS LNARDLEMEM EMEMLGLENI RTQQQQRQQL 420 IDDLSNNLYN NSNRFGEMKP TNLDDVYGSL DPSILSQIQG LSPKVSSPSG HQQIRQNSNP 480 LRSSYPTSNY PSSPGRKPTT FGFDSSAAVA QAVMNSRSGS FAKQRSQSFI DRGAGATMNL 540 RSMNQSSTYS EWGSPDGKLE WGFNCEEANK LRRSASFGFR SGNNGSPPMK GNHEADGSWA 600 GAGLYSSSEK VPQWVEQM

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MCKGSKGKFC STNLVMEGDK IQENKNGFFL KCSILLELAA IDDVAGFVFE VERKGMSLDE  60
VSFWYGRRNG SKGKMGFEER TPLMIASVYG STHVLKYLIG TQKVDVNKAS DSDGATALHC  120
AAAGGSPMSV ETVKLLLEAC ADPNLTDDND NKPVDLIARG IKSSKRKALE MLLKGLTIEE  180
GSDKEESEET EIITAKKEYP IDVSLPDIND GVYGTDEFRM YMFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKHQYSC VPCPEFRKGS CVKGDACEYA HGVFESWLHP AQYRTRLCKD  300
ETGCARKVCF FAHKVEELRP LYASTGSAVP SPKSGSVSSM EMGSMSPLGL GSTPPMSPSI  360
APVNGNMWQN KFVHLTPPAL QLSGSRLKTS LNARDLEMEM EMEMLGLENI RTQQQQRQQL  420
IDDLSNNLYN NSNRFGEMKP TNLDDVYGSL DPSILSQIQG LSPKVSSPSG HQQIRQNSNP  480
LRSSYPTSNY PSSPGRKPTT FGFDSSAAVA QAVMNSRSGS FAKQRSQSFI DRGAGATMNL  540
RSMNQSSTYS EWGSPDGKLE WGFNCEEANK LRRSASFGFR SGNNGSPPMK GNHEADGSWA  600
GAGLYSSSEK VPQWVEQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein