PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982708.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 195aa    MW: 21857.2 Da    PI: 8.2274
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.3e-32110166158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq Rak+e+e+k  +ksrkpylheSRh hAlrR Rg+gGrF
  XP_024982708.1 110 EEPVFVNAKQYHGILRRRQCRAKAESENKA-HKSRKPYLHESRHLHALRRSRGCGGRF 166
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MSSSAPEFSD NSESEVQQSQ LDAQIHSSPP ATGISHPSIS TPNIPYPTQL GANALGQAAY  60
PYPDPYYRSI YTPYESQPYP TQPYPVQPMV HLQLMGIQQA GVPLPSDTVE EPVFVNAKQY  120
HGILRRRQCR AKAESENKAH KSRKPYLHES RHLHALRRSR GCGGRFEKKD KHQKEMGSDD  180
NSESQVNINL NSDKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.26e-59NF-YA family protein