PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982738.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 214aa    MW: 24072.9 Da    PI: 5.1987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000141692051354
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     R+++++  + Lr ++P  +      +++ + +L +Av+Y+ksL
  XP_024982738.1 169 REKMRKMVNSLRGIVPGgN------RMNTVGVLDEAVKYLKSL 205
                     79999999********955......9***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MQSDQKHLRQ KTELPLADQV GSGYISNPPI ASLFGQNVDF QPSKICPRNF IIFDRTDNHS  60
QIMYHPAVAQ GFGYPGLNHI KDRMGVRNDM NDRREIESVM KEDSADIDLL LSFEEDEYEE  120
EEEEEVSTGR TQGNDASDTA DSCSSRPLRK SGLGVLSSSC SQKSSERKRE KMRKMVNSLR  180
GIVPGGNRMN TVGVLDEAVK YLKSLKVELQ KVEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.12e-28bHLH family protein