PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982740.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 733aa MW: 79254.9 Da PI: 6.6639

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_024982740.1 309 PCPDFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MCSGPEQNKS ASSSTTSAID KKFNKMVMSP LTVETEDSFS SLLEYAANND SEGFKRSIEN 60 DLSAIDEVGL WYVRKKGSKQ IVLEHRTPLM VASTYGSVSV LKLIIAQPKV DVNFSCGPDK 120 CTALHCAASG GSVDAIEVVK LLLSVGADPN IEDANGHRPI DVIIVPPKLS GVRASLEELL 180 MNNAFDGSVG DCKLTVSVTT SSSWSPTLSS SPDNGSPCSP SELVSSPMMS KFNDIPMNST 240 SEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH 360 TPEELRPLYV STGSAVPSPR SSAAGASVMD MAAALNLLPG SPSSVSVMSP AFNQQMSPSG 420 NGGPHSSVAW PQPNVPTLHL PGSNLQSSRL RSSLSARDIP PDDLSMLQDF ESQQLLNDLA 480 CFSQSRPGSL SLNRPTRSKT LAPANLEDLF SAELTSSPRY SDQAASSGVF SPSHKSAVLN 540 QFQQQQSVLS PINTNVFSPK NVDHALLQAS FGVSSPGRMS PRSMDPISPM GARLSAFAQR 600 EKQHQQQLRS LSSRDLGTNS PFNVGSPVNT TTSSSWSKWG SPTGKVDWSV NVDDFGKLKR 660 SSSFELNNNG AEEPDLSWVQ SLVKESPPEM MKNKSAAPAP SGSAAAPSGE VESSDHSVLG 720 AWLEQMQLDQ LVA

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MCSGPEQNKS ASSSTTSAID KKFNKMVMSP LTVETEDSFS SLLEYAANND SEGFKRSIEN  60
DLSAIDEVGL WYVRKKGSKQ IVLEHRTPLM VASTYGSVSV LKLIIAQPKV DVNFSCGPDK  120
CTALHCAASG GSVDAIEVVK LLLSVGADPN IEDANGHRPI DVIIVPPKLS GVRASLEELL  180
MNNAFDGSVG DCKLTVSVTT SSSWSPTLSS SPDNGSPCSP SELVSSPMMS KFNDIPMNST  240
SEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH  360
TPEELRPLYV STGSAVPSPR SSAAGASVMD MAAALNLLPG SPSSVSVMSP AFNQQMSPSG  420
NGGPHSSVAW PQPNVPTLHL PGSNLQSSRL RSSLSARDIP PDDLSMLQDF ESQQLLNDLA  480
CFSQSRPGSL SLNRPTRSKT LAPANLEDLF SAELTSSPRY SDQAASSGVF SPSHKSAVLN  540
QFQQQQSVLS PINTNVFSPK NVDHALLQAS FGVSSPGRMS PRSMDPISPM GARLSAFAQR  600
EKQHQQQLRS LSSRDLGTNS PFNVGSPVNT TTSSSWSKWG SPTGKVDWSV NVDDFGKLKR  660
SSSFELNNNG AEEPDLSWVQ SLVKESPPEM MKNKSAAPAP SGSAAAPSGE VESSDHSVLG  720
AWLEQMQLDQ LVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein