PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982765.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 966aa MW: 109795 Da PI: 7.1679

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	159.2	7.9e-50	87	204	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ +t+ XP_024982765.1 87 MEEaKTRWLRPNEIHAVLYNHKYFNISVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNNERIHVYYAHGEDRTTLV 181 55669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy++++ XP_024982765.1 182 RRCYWLLDKKLEHIVLVHYRDTQ 204 ******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence
MLSFLPLYIR YKIRIGSSLI CRFCSFLLII WSAVSFWVVG YCRSIAVIDF ESRGSFSEME 60 PTLQAGLVGS EIHGFKTMKD LDIPNMMEEA KTRWLRPNEI HAVLYNHKYF NISVKPVNLP 120 PSGTIVLFDR KMLRNFRKDG HNWKKKKDGK TVKEAHEHLK VGNNERIHVY YAHGEDRTTL 180 VRRCYWLLDK KLEHIVLVHY RDTQELQGSP VTPVDSNSSS DLPTSSNQSE EIDGVDQVYF 240 TEPNETVINH KMRIHEINTL EWDELVIPND SNKLLTSEGG NALFDHPNQY GLNGTIDDSN 300 SSLGHKLAME NPLATFCHEG NSVGNNIDLL KVGMEDARVA NVATGVLDMM GKEGLPSQDS 360 FRRWMNYIIT DSPGAIDDPL LTPEPLLIGQ ESLGILSGDR HESHSNEQIF SITEVSPAWA 420 LSSEETKILV VGVFQEKYLH LLNSNLFCVC GDACVPAEIV QSGVFRCMIT PQSPGIVNLF 480 ISSDGHKPIS QLMAFEFQLP PTTSLMDSLD EKPDWQELQI KMRLSHLLFS SSKSLTILSS 540 KVPQKTQKEA IMFVQKSRHI VDSWDYLVNS ITEKRISFQR AKNSLMELTL QNRLLEWLLE 600 KVLEGGKIPD RDDQGQGVIH LCAILDYNWA IYPYSWSGLS LDFRDKSGWT ALHWAAHYGR 660 QRMVASLLSA GANPNLVTDP TSENTNGCTP ADLASKSGYE GLAAYLAEKS LVAHFEAMTL 720 AGNVSGSLQS TFPTNDDFAL NTPSAQINED EQYLKDTLAA YRTAADAAAR IQAAFREQSF 780 KLRTKEVESS STEDEARSII AAMRIQHAFR NHETKKQMAA AARIQHRFRT WKIRKDFLNK 840 RRQVIKIQAI FRGHQVRRQY TKIVWSVGVL EKAILRWRLK RRGFRGLQVD PNNVEKDENQ 900 ENNGMEGFFR ASRKQAEERV ERSVVRVQAM FRSKRAQEEY RKMKQEHLQA SHEYDGSLDP 960 ATDMEK

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence

MLSFLPLYIR YKIRIGSSLI CRFCSFLLII WSAVSFWVVG YCRSIAVIDF ESRGSFSEME  60
PTLQAGLVGS EIHGFKTMKD LDIPNMMEEA KTRWLRPNEI HAVLYNHKYF NISVKPVNLP  120
PSGTIVLFDR KMLRNFRKDG HNWKKKKDGK TVKEAHEHLK VGNNERIHVY YAHGEDRTTL  180
VRRCYWLLDK KLEHIVLVHY RDTQELQGSP VTPVDSNSSS DLPTSSNQSE EIDGVDQVYF  240
TEPNETVINH KMRIHEINTL EWDELVIPND SNKLLTSEGG NALFDHPNQY GLNGTIDDSN  300
SSLGHKLAME NPLATFCHEG NSVGNNIDLL KVGMEDARVA NVATGVLDMM GKEGLPSQDS  360
FRRWMNYIIT DSPGAIDDPL LTPEPLLIGQ ESLGILSGDR HESHSNEQIF SITEVSPAWA  420
LSSEETKILV VGVFQEKYLH LLNSNLFCVC GDACVPAEIV QSGVFRCMIT PQSPGIVNLF  480
ISSDGHKPIS QLMAFEFQLP PTTSLMDSLD EKPDWQELQI KMRLSHLLFS SSKSLTILSS  540
KVPQKTQKEA IMFVQKSRHI VDSWDYLVNS ITEKRISFQR AKNSLMELTL QNRLLEWLLE  600
KVLEGGKIPD RDDQGQGVIH LCAILDYNWA IYPYSWSGLS LDFRDKSGWT ALHWAAHYGR  660
QRMVASLLSA GANPNLVTDP TSENTNGCTP ADLASKSGYE GLAAYLAEKS LVAHFEAMTL  720
AGNVSGSLQS TFPTNDDFAL NTPSAQINED EQYLKDTLAA YRTAADAAAR IQAAFREQSF  780
KLRTKEVESS STEDEARSII AAMRIQHAFR NHETKKQMAA AARIQHRFRT WKIRKDFLNK  840
RRQVIKIQAI FRGHQVRRQY TKIVWSVGVL EKAILRWRLK RRGFRGLQVD PNNVEKDENQ  900
ENNGMEGFFR ASRKQAEERV ERSVVRVQAM FRSKRAQEEY RKMKQEHLQA SHEYDGSLDP  960
ATDMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein