PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982766.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 918aa MW: 104062 Da PI: 6.8838

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	159.3	7.3e-50	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ +t+ XP_024982766.1 29 MEEaKTRWLRPNEIHAVLYNHKYFNISVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNNERIHVYYAHGEDRTTLV 123 55669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy++++ XP_024982766.1 124 RRCYWLLDKKLEHIVLVHYRDTQ 146 ******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence
MEPTLQAGLV GSEIHGFKTM KDLDIPNMME EAKTRWLRPN EIHAVLYNHK YFNISVKPVN 60 LPPSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNNERIH VYYAHGEDRT 120 TLVRRCYWLL DKKLEHIVLV HYRDTQELQG SPVTPVDSNS SSDLPTSSNQ SEEIDGVDQV 180 YFTGVFSVFG DSTEPNETVI NHKMRIHEIN TLEWDELVIP NDSNKLLTSE GGNALFDHPN 240 QYGLNGTIDD SNSSLGHKLA MENPLATFCH EGNSVGNNID LLKVGMEDAR VANVATGVLD 300 MMGKEGLPSQ DSFRRWMNYI ITDSPGAIDD PLLTPEPLLI GQESLGILSG DRHESHSNEQ 360 IFSITEVSPA WALSSEETKI LVVGVFQEKY LHLLNSNLFC VCGDACVPAE IVQSGVFRCM 420 ITPQSPGIVN LFISSDGHKP ISQLMAFEFQ LPPTTSLMDS LDEKPDWQEL QIKMRLSHLL 480 FSSSKSLTIL SSKVPQKTQK EAIMFVQKSR HIVDSWDYLV NSITEKRISF QRAKNSLMEL 540 TLQNRLLEWL LEKVLEGGKI PDRDDQGQGV IHLCAILDYN WAIYPYSWSG LSLDFRDKSG 600 WTALHWAAHY GRQRMVASLL SAGANPNLVT DPTSENTNGC TPADLASKSG YEGLAAYLAE 660 KSLVAHFEAM TLAGNVSGSL QSTFPTNDDF ALNTPSAQIN EDEQYLKDTL AAYRTAADAA 720 ARIQAAFREQ SFKLRTKEVE SSSTEDEARS IIAAMRIQHA FRNHETKKQM AAAARIQHRF 780 RTWKIRKDFL NKRRQVIKIQ AIFRGHQVRR QYTKIVWSVG VLEKAILRWR LKRRGFRGLQ 840 VDPNNVEKDE NQENNGMEGF FRASRKQAEE RVERSVVRVQ AMFRSKRAQE EYRKMKQEHL 900 QASHEYDGSL DPATDMEK

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence

MEPTLQAGLV GSEIHGFKTM KDLDIPNMME EAKTRWLRPN EIHAVLYNHK YFNISVKPVN  60
LPPSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNNERIH VYYAHGEDRT  120
TLVRRCYWLL DKKLEHIVLV HYRDTQELQG SPVTPVDSNS SSDLPTSSNQ SEEIDGVDQV  180
YFTGVFSVFG DSTEPNETVI NHKMRIHEIN TLEWDELVIP NDSNKLLTSE GGNALFDHPN  240
QYGLNGTIDD SNSSLGHKLA MENPLATFCH EGNSVGNNID LLKVGMEDAR VANVATGVLD  300
MMGKEGLPSQ DSFRRWMNYI ITDSPGAIDD PLLTPEPLLI GQESLGILSG DRHESHSNEQ  360
IFSITEVSPA WALSSEETKI LVVGVFQEKY LHLLNSNLFC VCGDACVPAE IVQSGVFRCM  420
ITPQSPGIVN LFISSDGHKP ISQLMAFEFQ LPPTTSLMDS LDEKPDWQEL QIKMRLSHLL  480
FSSSKSLTIL SSKVPQKTQK EAIMFVQKSR HIVDSWDYLV NSITEKRISF QRAKNSLMEL  540
TLQNRLLEWL LEKVLEGGKI PDRDDQGQGV IHLCAILDYN WAIYPYSWSG LSLDFRDKSG  600
WTALHWAAHY GRQRMVASLL SAGANPNLVT DPTSENTNGC TPADLASKSG YEGLAAYLAE  660
KSLVAHFEAM TLAGNVSGSL QSTFPTNDDF ALNTPSAQIN EDEQYLKDTL AAYRTAADAA  720
ARIQAAFREQ SFKLRTKEVE SSSTEDEARS IIAAMRIQHA FRNHETKKQM AAAARIQHRF  780
RTWKIRKDFL NKRRQVIKIQ AIFRGHQVRR QYTKIVWSVG VLEKAILRWR LKRRGFRGLQ  840
VDPNNVEKDE NQENNGMEGF FRASRKQAEE RVERSVVRVQ AMFRSKRAQE EYRKMKQEHL  900
QASHEYDGSL DPATDMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein