PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982835.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 359aa MW: 40049.2 Da PI: 8.053

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.8e-09	39	59	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C yG+rC++ H+ XP_024982835.1 39 VCTFYQK-GACAYGSRCRYDHV 59 5****.***********7 PP
2	zf-CCCH	17.3	8.5e-06	143	162	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ fa+ G C++G++C+ Hg XP_024982835.1 143 CS-FAAAGSCPRGENCPHVHG 162 66.*************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MSLPGNRTRV LCKFFAHGAC LKGEHCEFSH DWKDPANNVC TFYQKGACAY GSRCRYDHVK 60 VSQRQTSASS SAYPYQFADS ESVNASSASA TAVPGVIGEL SASSRPYISP AKPAWGEGSG 120 QDDLLNDVIG QSRSTNPADI VMCSFAAAGS CPRGENCPHV HGDLCPTCRK QCLHPFRPDE 180 REEHKKSCEK KHKHLEALKH SQEIECSVCL ERVLSKPTAA ERKFGLLSEC DHPFCISCIR 240 NWRSSSPTSG MDVNSALRSC PICRKLSYFV IPSVIWYATK DEKQEIVDSY KARLRSIDCR 300 HFDFGNGACP FGTSCFYKHA YRDGRLEEVV LRHLGDEDGQ TVIAKDIRLS DFLNRMRIR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MSLPGNRTRV LCKFFAHGAC LKGEHCEFSH DWKDPANNVC TFYQKGACAY GSRCRYDHVK  60
VSQRQTSASS SAYPYQFADS ESVNASSASA TAVPGVIGEL SASSRPYISP AKPAWGEGSG  120
QDDLLNDVIG QSRSTNPADI VMCSFAAAGS CPRGENCPHV HGDLCPTCRK QCLHPFRPDE  180
REEHKKSCEK KHKHLEALKH SQEIECSVCL ERVLSKPTAA ERKFGLLSEC DHPFCISCIR  240
NWRSSSPTSG MDVNSALRSC PICRKLSYFV IPSVIWYATK DEKQEIVDSY KARLRSIDCR  300
HFDFGNGACP FGTSCFYKHA YRDGRLEEVV LRHLGDEDGQ TVIAKDIRLS DFLNRMRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-142	C3H family protein