PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982854.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 132aa MW: 15627.6 Da PI: 10.4185

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.4	1.4e-12	11	56	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g+W eEdell++ v+++G+++W++ + g + Rt+k+c++rw++ XP_024982854.1 11 KGPWKIEEDELLIKHVEEYGPKDWDL-PLSKGhLQRTGKSCRLRWLN 56 79**********************.777779**********98 PP
2	Myb_DNA-binding	39.1	1.8e-12	64	105	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g +++ E + l d+ ++G++ W++Ia +++ gR+ +++k+ w XP_024982854.1 64 KGMFSEMEKQMLFDLQGKYGNK-WAKIATHLP-GRSVYHVKNVW 105 6789****************.*****.******988 PP

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence
MEQRIPIKIK KGPWKIEEDE LLIKHVEEYG PKDWDLPLSK GHLQRTGKSC RLRWLNNYQP 60 NLKKGMFSEM EKQMLFDLQG KYGNKWAKIA THLPGRSVYH VKNVWWMKLS TDVLMIKVIP 120 VMMVFKFVGV LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	8e-35	MYB family protein