PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982953.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 475aa MW: 53482.6 Da PI: 10.2152

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.7e-08	12	47	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r+ W t+E+++l av ++G+g+W+ I++++ +Rt+ XP_024982953.1 12 RKVWGTWEELILGGAVLRHGTGDWDVISSELR-TRTA 47 789*****************************.9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MDDVSVVMVG PRKVWGTWEE LILGGAVLRH GTGDWDVISS ELRTRTACPY YFTPEACRAR 60 YVDLQQRYTG CKYWYDELRE RRVAELKREL EKSEESIGFL VSKLENLKAE KAHCDHIEYD 120 SSQTESPPLP LPKTKGIKIK TIHKEGLKDE FELSAGSFTQ DLETNPQPKS HSPSLNSSQN 180 VEIKLQVPES CMNTMIEPSQ EKGGTIRKRR GKRKRKDGNW EAKEGIVESE NLGSSSGVRR 240 NETSTSGCGQ TVRSSSADLQ DGDSCRGRET DDLVGIFNSV TENQYALVFR RRLDSQKRAR 300 YRKTIRQHID LETIRSRIGN CCIKSTRELF RDLFLLANNA LVFYSKRTRE YKSALTLRGI 360 VTKKYKQLCS ESGSSSSRPL SSMLCFSSMS SPPVRPRSIR ARAPSKQVKV VVKFPTSGQM 420 VGRHGYLKVS SNSDSSSLNP PEASQSNVEL SGSKGKVGTG LGRPRRVNRK RAHQK

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MDDVSVVMVG PRKVWGTWEE LILGGAVLRH GTGDWDVISS ELRTRTACPY YFTPEACRAR  60
YVDLQQRYTG CKYWYDELRE RRVAELKREL EKSEESIGFL VSKLENLKAE KAHCDHIEYD  120
SSQTESPPLP LPKTKGIKIK TIHKEGLKDE FELSAGSFTQ DLETNPQPKS HSPSLNSSQN  180
VEIKLQVPES CMNTMIEPSQ EKGGTIRKRR GKRKRKDGNW EAKEGIVESE NLGSSSGVRR  240
NETSTSGCGQ TVRSSSADLQ DGDSCRGRET DDLVGIFNSV TENQYALVFR RRLDSQKRAR  300
YRKTIRQHID LETIRSRIGN CCIKSTRELF RDLFLLANNA LVFYSKRTRE YKSALTLRGI  360
VTKKYKQLCS ESGSSSSRPL SSMLCFSSMS SPPVRPRSIR ARAPSKQVKV VVKFPTSGQM  420
VGRHGYLKVS SNSDSSSLNP PEASQSNVEL SGSKGKVGTG LGRPRRVNRK RAHQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	217	RKRRGKRKRKD
2	209	219	RKRRGKRKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	4e-25	MYB_related family protein