PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983260.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 868aa MW: 97800.5 Da PI: 8.3808

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.8	2.4e-54	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++k++l ++++ +p+ gsl+L++rk++ryfrkDG+ w+kkkdgk v+E+hekLK g+v+vl+cyYah+e+n +fqr XP_024983260.1 20 QEaQHRWLRPAEICEILTNYHKFQLRTSPPANPPAGSLFLFDRKVLRYFRKDGHRWRKKKDGKIVKEAHEKLKAGSVDVLHCYYAHGEDNDKFQR 114 5669***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+L++++e+ivlvhy+evk XP_024983260.1 115 RSYWMLDKRFENIVLVHYREVK 136 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence
MAETKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRTSPPA NPPAGSLFLF 60 DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDND KFQRRSYWML 120 DKRFENIVLV HYREVKEGYK SGSPHVLNAD SGSLLQSSES SLSPGCCHAS VDRNEQSASS 180 RLNDGQSFKD VGISSLDQPN RSTFHAGYLD REPFHPVPDS STWTNFNGSA RDTITADVLS 240 YKLTEARLDV GSHSHDFLNG LFPDPLQVHA GFEAIDTSAV NCSIQNDDAG GLKKLDSFGR 300 WMDKEMGGDC EDSLLAANSG NYWNALETEN DRDQASSLTH HMQLNTDSVG PSLAKEQQFS 360 ILDFAPDWAY SGTETKVLIA GTFVGDKKRW SEIKWCCMFG EIEVPAELVT ENTIRCQVPF 420 HAAQRVPFYI TCGNRLACSE VREFEYVEKP AEHPVDEDEL VLMIRLSKLL SSLGIQRKWL 480 GCSMMNCEKC KLKDVICSLV RDKERSWKRI TEAFKGNSEE LLIQNLLKDK LYEQLLPEAH 540 ETCQGLRMLD EKGQGVIHLV SALGYEWAVG PIVAAGVSSN FRDARGRTAL HWASLYGREE 600 TVVALVKLGA FAGAVDDPTG LNPGGQTAAD LASSKGHKGI AGYLAEEDLT SHLSALSVNG 660 GNSAVANGDK EHSLRGSVAA VRRSVHAAAL IQDAFRARSF RQRQVSRNMN EELVALATAA 720 AASSSHKVQK RGEYEDYLQV AAASRIQQKY RGWKGRNDFL KIRERIVKIQ AHFRGHQVRK 780 HYKKVVWSVG IVEKAILRWR RKSRGLRGFR VGKEEAAGEY DFLRIGRRQK YVGVEKALAR 840 VQSMARHPEA QEQYMRLVEK MKRHEEDR

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence

MAETKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRTSPPA NPPAGSLFLF  60
DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDND KFQRRSYWML  120
DKRFENIVLV HYREVKEGYK SGSPHVLNAD SGSLLQSSES SLSPGCCHAS VDRNEQSASS  180
RLNDGQSFKD VGISSLDQPN RSTFHAGYLD REPFHPVPDS STWTNFNGSA RDTITADVLS  240
YKLTEARLDV GSHSHDFLNG LFPDPLQVHA GFEAIDTSAV NCSIQNDDAG GLKKLDSFGR  300
WMDKEMGGDC EDSLLAANSG NYWNALETEN DRDQASSLTH HMQLNTDSVG PSLAKEQQFS  360
ILDFAPDWAY SGTETKVLIA GTFVGDKKRW SEIKWCCMFG EIEVPAELVT ENTIRCQVPF  420
HAAQRVPFYI TCGNRLACSE VREFEYVEKP AEHPVDEDEL VLMIRLSKLL SSLGIQRKWL  480
GCSMMNCEKC KLKDVICSLV RDKERSWKRI TEAFKGNSEE LLIQNLLKDK LYEQLLPEAH  540
ETCQGLRMLD EKGQGVIHLV SALGYEWAVG PIVAAGVSSN FRDARGRTAL HWASLYGREE  600
TVVALVKLGA FAGAVDDPTG LNPGGQTAAD LASSKGHKGI AGYLAEEDLT SHLSALSVNG  660
GNSAVANGDK EHSLRGSVAA VRRSVHAAAL IQDAFRARSF RQRQVSRNMN EELVALATAA  720
AASSSHKVQK RGEYEDYLQV AAASRIQQKY RGWKGRNDFL KIRERIVKIQ AHFRGHQVRK  780
HYKKVVWSVG IVEKAILRWR RKSRGLRGFR VGKEEAAGEY DFLRIGRRQK YVGVEKALAR  840
VQSMARHPEA QEQYMRLVEK MKRHEEDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-138	CAMTA family protein