PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983261.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 865aa MW: 97467.2 Da PI: 8.3823

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.8	2.4e-54	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++k++l ++++ +p+ gsl+L++rk++ryfrkDG+ w+kkkdgk v+E+hekLK g+v+vl+cyYah+e+n +fqr XP_024983261.1 20 QEaQHRWLRPAEICEILTNYHKFQLRTSPPANPPAGSLFLFDRKVLRYFRKDGHRWRKKKDGKIVKEAHEKLKAGSVDVLHCYYAHGEDNDKFQR 114 5669***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+L++++e+ivlvhy+evk XP_024983261.1 115 RSYWMLDKRFENIVLVHYREVK 136 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence
MAETKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRTSPPA NPPAGSLFLF 60 DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDND KFQRRSYWML 120 DKRFENIVLV HYREVKEGYK SGSPHVLNAD SGSLLQSSES SLSPGCCHAS VDRNEQSASS 180 RLNDGQSFKD VGISSLDQPN RSTFHADREP FHPVPDSSTW TNFNGSARDT ITADVLSYKL 240 TEARLDVGSH SHDFLNGLFP DPLQVHAGFE AIDTSAVNCS IQNDDAGGLK KLDSFGRWMD 300 KEMGGDCEDS LLAANSGNYW NALETENDRD QASSLTHHMQ LNTDSVGPSL AKEQQFSILD 360 FAPDWAYSGT ETKVLIAGTF VGDKKRWSEI KWCCMFGEIE VPAELVTENT IRCQVPFHAA 420 QRVPFYITCG NRLACSEVRE FEYVEKPAEH PVDEDELVLM IRLSKLLSSL GIQRKWLGCS 480 MMNCEKCKLK DVICSLVRDK ERSWKRITEA FKGNSEELLI QNLLKDKLYE QLLPEAHETC 540 QGLRMLDEKG QGVIHLVSAL GYEWAVGPIV AAGVSSNFRD ARGRTALHWA SLYGREETVV 600 ALVKLGAFAG AVDDPTGLNP GGQTAADLAS SKGHKGIAGY LAEEDLTSHL SALSVNGGNS 660 AVANGDKEHS LRGSVAAVRR SVHAAALIQD AFRARSFRQR QVSRNMNEEL VALATAAAAS 720 SSHKVQKRGE YEDYLQVAAA SRIQQKYRGW KGRNDFLKIR ERIVKIQAHF RGHQVRKHYK 780 KVVWSVGIVE KAILRWRRKS RGLRGFRVGK EEAAGEYDFL RIGRRQKYVG VEKALARVQS 840 MARHPEAQEQ YMRLVEKMKR HEEDR

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence

MAETKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRTSPPA NPPAGSLFLF  60
DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDND KFQRRSYWML  120
DKRFENIVLV HYREVKEGYK SGSPHVLNAD SGSLLQSSES SLSPGCCHAS VDRNEQSASS  180
RLNDGQSFKD VGISSLDQPN RSTFHADREP FHPVPDSSTW TNFNGSARDT ITADVLSYKL  240
TEARLDVGSH SHDFLNGLFP DPLQVHAGFE AIDTSAVNCS IQNDDAGGLK KLDSFGRWMD  300
KEMGGDCEDS LLAANSGNYW NALETENDRD QASSLTHHMQ LNTDSVGPSL AKEQQFSILD  360
FAPDWAYSGT ETKVLIAGTF VGDKKRWSEI KWCCMFGEIE VPAELVTENT IRCQVPFHAA  420
QRVPFYITCG NRLACSEVRE FEYVEKPAEH PVDEDELVLM IRLSKLLSSL GIQRKWLGCS  480
MMNCEKCKLK DVICSLVRDK ERSWKRITEA FKGNSEELLI QNLLKDKLYE QLLPEAHETC  540
QGLRMLDEKG QGVIHLVSAL GYEWAVGPIV AAGVSSNFRD ARGRTALHWA SLYGREETVV  600
ALVKLGAFAG AVDDPTGLNP GGQTAADLAS SKGHKGIAGY LAEEDLTSHL SALSVNGGNS  660
AVANGDKEHS LRGSVAAVRR SVHAAALIQD AFRARSFRQR QVSRNMNEEL VALATAAAAS  720
SSHKVQKRGE YEDYLQVAAA SRIQQKYRGW KGRNDFLKIR ERIVKIQAHF RGHQVRKHYK  780
KVVWSVGIVE KAILRWRRKS RGLRGFRVGK EEAAGEYDFL RIGRRQKYVG VEKALARVQS  840
MARHPEAQEQ YMRLVEKMKR HEEDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-138	CAMTA family protein