PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983264.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 828aa MW: 93063.2 Da PI: 8.4979

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	136.6	8e-43	9	96	31	118
CG-1 31 ktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +++ gsl+L++rk++ryfrkDG+ w+kkkdgk v+E+hekLK g+v+vl+cyYah+e+n +fqrr+yw+L++++e+ivlvhy+evk XP_024983264.1 9 PNQLLAGSLFLFDRKVLRYFRKDGHRWRKKKDGKIVKEAHEKLKAGSVDVLHCYYAHGEDNDKFQRRSYWMLDKRFENIVLVHYREVK 96 678889*******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence
MAETKCYIPN QLLAGSLFLF DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH 60 CYYAHGEDND KFQRRSYWML DKRFENIVLV HYREVKEGYK SGSPHVLNAD SGSLLQSSES 120 SLSPGCCHAS VDRNEQSASS RLNDGQSFKD VGISSLDQPN RSTFHAGYLD REPFHPVPDS 180 STWTNFNGSA RDTITADVLS YKLTEARLDV GSHSHDFLNG LFPDPLQVHA GFEAIDTSAV 240 NCSIQNDDAG GLKKLDSFGR WMDKEMGGDC EDSLLAANSG NYWNALETEN DRDQASSLTH 300 HMQLNTDSVG PSLAKEQQFS ILDFAPDWAY SGTETKVLIA GTFVGDKKRW SEIKWCCMFG 360 EIEVPAELVT ENTIRCQVPF HAAQRVPFYI TCGNRLACSE VREFEYVEKP AEHPVDEDEL 420 VLMIRLSKLL SSLGIQRKWL GCSMMNCEKC KLKDVICSLV RDKERSWKRI TEAFKGNSEE 480 LLIQNLLKDK LYEQLLPEAH ETCQGLRMLD EKGQGVIHLV SALGYEWAVG PIVAAGVSSN 540 FRDARGRTAL HWASLYGREE TVVALVKLGA FAGAVDDPTG LNPGGQTAAD LASSKGHKGI 600 AGYLAEEDLT SHLSALSVNG GNSAVANGDK EHSLRGSVAA VRRSVHAAAL IQDAFRARSF 660 RQRQVSRNMN EELVALATAA AASSSHKVQK RGEYEDYLQV AAASRIQQKY RGWKGRNDFL 720 KIRERIVKIQ AHFRGHQVRK HYKKVVWSVG IVEKAILRWR RKSRGLRGFR VGKEEAAGEY 780 DFLRIGRRQK YVGVEKALAR VQSMARHPEA QEQYMRLVEK MKRHEEDR

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence

MAETKCYIPN QLLAGSLFLF DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH  60
CYYAHGEDND KFQRRSYWML DKRFENIVLV HYREVKEGYK SGSPHVLNAD SGSLLQSSES  120
SLSPGCCHAS VDRNEQSASS RLNDGQSFKD VGISSLDQPN RSTFHAGYLD REPFHPVPDS  180
STWTNFNGSA RDTITADVLS YKLTEARLDV GSHSHDFLNG LFPDPLQVHA GFEAIDTSAV  240
NCSIQNDDAG GLKKLDSFGR WMDKEMGGDC EDSLLAANSG NYWNALETEN DRDQASSLTH  300
HMQLNTDSVG PSLAKEQQFS ILDFAPDWAY SGTETKVLIA GTFVGDKKRW SEIKWCCMFG  360
EIEVPAELVT ENTIRCQVPF HAAQRVPFYI TCGNRLACSE VREFEYVEKP AEHPVDEDEL  420
VLMIRLSKLL SSLGIQRKWL GCSMMNCEKC KLKDVICSLV RDKERSWKRI TEAFKGNSEE  480
LLIQNLLKDK LYEQLLPEAH ETCQGLRMLD EKGQGVIHLV SALGYEWAVG PIVAAGVSSN  540
FRDARGRTAL HWASLYGREE TVVALVKLGA FAGAVDDPTG LNPGGQTAAD LASSKGHKGI  600
AGYLAEEDLT SHLSALSVNG GNSAVANGDK EHSLRGSVAA VRRSVHAAAL IQDAFRARSF  660
RQRQVSRNMN EELVALATAA AASSSHKVQK RGEYEDYLQV AAASRIQQKY RGWKGRNDFL  720
KIRERIVKIQ AHFRGHQVRK HYKKVVWSVG IVEKAILRWR RKSRGLRGFR VGKEEAAGEY  780
DFLRIGRRQK YVGVEKALAR VQSMARHPEA QEQYMRLVEK MKRHEEDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-139	CAMTA family protein