PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983501.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 300aa    MW: 33228.2 Da    PI: 4.6279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05277299223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C++sF++ s L++H +  H
  XP_024983501.1 277 SCKSCNRSFKTDSALQSHNQAkH 299
                     6*****************76555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MEFWGVEVKS GQPLEVNLGE GKVLHLSQAC LGEIKKDKSN ESVCLHITVE EKKLVLGTLH  60
SERLPQQLFD LVFDKDFKLS HNWKNGSVYF YGYKADQPSD DHDDSEEFDS EEEEDALQLP  120
IPNGKQEAKK EEKPVVPNKK DLAPKVPGKQ HVKIVEPEKD TKSEGNDSDD DDSDDSDAMS  180
EDSDDDEENE DSSDDEEEDS DEEEETPKKQ QSGKKRPNES AIKTPGTDKK AKLTTPQKTE  240
GKKGGHVATP HPSKQAAAKT PANKSNQKSP ASEGAVSCKS CNRSFKTDSA LQSHNQAKHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-33C2H2 family protein