PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983676.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 385aa MW: 42558.2 Da PI: 6.5196

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.4e-16	212	267	2	56
T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + ++ LA++l+L rqV vWFqNrRa+ k XP_024983676.1 212 RKKLRLSKEQSAYLEESFKEHNTLNPQkQKLALAEQLNLRPRQVEVWFQNRRARTK 267 788899************999997626779********************98 PP
2	HD-ZIP_I/II	121	6e-39	212	303	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l++en+rL+ke +eLr +lk XP_024983676.1 212 RKKLRLSKEQSAYLEESFKEHNTLNPqKQKLALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTDENRRLHKELQELR-ALK 303 69*********************94579********************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MELGLSLGDA PSKATDGFTA STTTTTPVNK SLGFCMALGM NPSNGTTNKG FPEKPQIQDD 60 QDDGDEHDDD DDDDEEHEKD NQRILKENGG IKEMIVSSQR ICSLNPPVQL DLLPSAPVPR 120 HTPFPWSSDN EGGSSGNAAA GRGFDVKRMP AAVGTEEATS SFRLDFMSYR RTGNVNGGSK 180 NNKRGFEIGN EAIEVERASS RASDEDENGI SRKKLRLSKE QSAYLEESFK EHNTLNPQKQ 240 KLALAEQLNL RPRQVEVWFQ NRRARTKLKQ TEVDYEYLKR CCETLTDENR RLHKELQELR 300 ALKTSSNPFY RQLPATTLTM CPSCERVATT SAPPPSATLS KQVEQNSKKA STTPLTLSAK 360 PRSLIFPVSH APPCNNSHHQ PAAPS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MELGLSLGDA PSKATDGFTA STTTTTPVNK SLGFCMALGM NPSNGTTNKG FPEKPQIQDD  60
QDDGDEHDDD DDDDEEHEKD NQRILKENGG IKEMIVSSQR ICSLNPPVQL DLLPSAPVPR  120
HTPFPWSSDN EGGSSGNAAA GRGFDVKRMP AAVGTEEATS SFRLDFMSYR RTGNVNGGSK  180
NNKRGFEIGN EAIEVERASS RASDEDENGI SRKKLRLSKE QSAYLEESFK EHNTLNPQKQ  240
KLALAEQLNL RPRQVEVWFQ NRRARTKLKQ TEVDYEYLKR CCETLTDENR RLHKELQELR  300
ALKTSSNPFY RQLPATTLTM CPSCERVATT SAPPPSATLS KQVEQNSKKA STTPLTLSAK  360
PRSLIFPVSH APPCNNSHHQ PAAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	217	SRKKLRL
2	262	270	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-77	HD-ZIP family protein