PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983695.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SBP
Protein Properties Length: 142aa    MW: 16550.4 Da    PI: 8.8166
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.3e-4258133277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqve+C++d+s+ k+yhrrhkvCevh+kap v++ +++qrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk++
  XP_024983695.1  58 CQVEECTTDMSRSKTYHRRHKVCEVHAKAPIVVIGERQQRFCQQCSRFHDLTEFDDAKRSCRRRLAGHNERRRKSS 133
                     **************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MGTRKSGRVV RGMDDKYKNE MMEEWEEEDD GTYVEDSRKK ATMGRRGSVS GGPTQPFCQV  60
EECTTDMSRS KTYHRRHKVC EVHAKAPIVV IGERQQRFCQ QCSRFHDLTE FDDAKRSCRR  120
RLAGHNERRR KSSYESYGET SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.14e-35SBP family protein