PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983804.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 473aa MW: 51469.7 Da PI: 9.137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024983804.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12	0.00066	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_024983804.1 142 WKCEKCSKKYAVQSDWKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MMSGDGFSSP PSSLTSFIHD PIPNPNPNPN SSASGKRKRN QAGNPDPDAE VIALSPTSLM 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKNE VIKKKVYICP EKSCVHHDPS 120 RALGDLTGVK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRK 180 DSFITHRAFC DALMEENSRM TSLPVVPNMT NLSFRSDLMM MNAGGGGGGG GGNGGGDTQF 240 QGMFPGGLEG NLDVNGAKPR LPIWLDHNAN NPHLENPNNS TFLGSSSSNY SNSGMLPSEM 300 VNWLSRYNGL PQGLSLKEEE ENQKEMQMNS MYNYGGSTTQ NNLLCSTLPP PPVANMSATA 360 LLQKAAQMGS TRSTNAGVSG GNDTGFGLMS TTLSSLSSPA RNGDRLMMMT AAADGSTPNK 420 VAGGNEFGDG DLTRDFLGGA RNERSHVSFN LQQELSKFAS STMGFSQFNR NRE

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MMSGDGFSSP PSSLTSFIHD PIPNPNPNPN SSASGKRKRN QAGNPDPDAE VIALSPTSLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKNE VIKKKVYICP EKSCVHHDPS  120
RALGDLTGVK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRK  180
DSFITHRAFC DALMEENSRM TSLPVVPNMT NLSFRSDLMM MNAGGGGGGG GGNGGGDTQF  240
QGMFPGGLEG NLDVNGAKPR LPIWLDHNAN NPHLENPNNS TFLGSSSSNY SNSGMLPSEM  300
VNWLSRYNGL PQGLSLKEEE ENQKEMQMNS MYNYGGSTTQ NNLLCSTLPP PPVANMSATA  360
LLQKAAQMGS TRSTNAGVSG GNDTGFGLMS TTLSSLSSPA RNGDRLMMMT AAADGSTPNK  420
VAGGNEFGDG DLTRDFLGGA RNERSHVSFN LQQELSKFAS STMGFSQFNR NRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein