PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983876.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 209aa    MW: 25060.6 Da    PI: 10.269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd ll + vk++G g+W+++ar  g++R +k+c++rw +yl
   XP_024983876.1 10 KGPWTTEEDSLLTEHVKLHGEGRWNSVARLAGLKRNAKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding56.18.3e-1863107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+ E+++++d+++++G++ W+tIar ++ gRt++++k++w+++
   XP_024983876.1  63 RGKITPHEEKIILDLHTRWGNR-WSTIARSLP-GRTDNEIKNYWRTH 107
                      8999******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MEESMRFWRK GPWTTEEDSL LTEHVKLHGE GRWNSVARLA GLKRNAKSCR LRWVNYLRPD  60
LKRGKITPHE EKIILDLHTR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK KGKLNSDDSV  120
KLKARLLKRQ KFQQEQRNQI QLQKNKEDME KVLLLLEESN SKVASRHQDM VHEEMPSVLY  180
PMTFNDSQHV VETNSMYDDF VLWDGLWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-76MYB family protein