PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984015.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 365aa MW: 40764.5 Da PI: 5.8349

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++++ G g+W++ ++ g++R++k+c++rw +yl XP_024984015.1 15 KGPWTPEEDQKLIDYIERNGHGSWRALPALAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.6	5.9e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+++++ lG++ W++Ia +++ gRt++++k++w+++l XP_024984015.1 68 RGNFTEDEEKLIIHLHSHLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MMGRSSSSDE SGLKKGPWTP EEDQKLIDYI ERNGHGSWRA LPALAGLNRC GKSCRLRWTN 60 YLRPDIKRGN FTEDEEKLII HLHSHLGNKW SAIATHLPGR TDNEIKNFWN THLKKKLLQM 120 GIDPVTHQPR TDHLDILAHL PQLLAMAANN LGATNLLNPS FFDMNLTTLM SQSEATEIAK 180 FQLLQNILQV LSTNNTTTSI PQNIDQFYAV QLSEYLKLNP QHLQNLQELA MNEAQTTSSL 240 PSFSAHDFVS PSYSNLELDH QEGSKGVGEQ HGMTVGKEEY GRFESVPPLV PASPENVNGG 300 GKGRSDGGDT HIELGNTSLL TKQNEHLSSS TSTTTIDANW QDFMDDEATG CYWKEIIERT 360 SPSWS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MMGRSSSSDE SGLKKGPWTP EEDQKLIDYI ERNGHGSWRA LPALAGLNRC GKSCRLRWTN  60
YLRPDIKRGN FTEDEEKLII HLHSHLGNKW SAIATHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHQPR TDHLDILAHL PQLLAMAANN LGATNLLNPS FFDMNLTTLM SQSEATEIAK  180
FQLLQNILQV LSTNNTTTSI PQNIDQFYAV QLSEYLKLNP QHLQNLQELA MNEAQTTSSL  240
PSFSAHDFVS PSYSNLELDH QEGSKGVGEQ HGMTVGKEEY GRFESVPPLV PASPENVNGG  300
GKGRSDGGDT HIELGNTSLL TKQNEHLSSS TSTTTIDANW QDFMDDEATG CYWKEIIERT  360
SPSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-97	MYB family protein