PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984059.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 29281.8 Da    PI: 6.3211
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien s rqvtfskRr+g+lKKA+EL vLCdaev +i+fs+tg+ly++ss
  XP_024984059.1  9 KKIENVSTRQVTFSKRRAGLLKKAHELAVLCDAEVGIIVFSNTGRLYDFSS 59
                    68***********************************************96 PP
2K-box622.3e-21801691099
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + ++ + q el+ Lk+e+  L++e+ +l+G++L+  s++eL++Leq+L++sl +i++kK+ +l+e+ie++ +ke+el  en+ Lr +++
  XP_024984059.1  80 LQVEMRQEQAELETLKNEVARLRSENARLMGNNLGGTSVQELHKLEQKLNDSLISIKDKKDAMLFEEIERSNRKERELGYENEVLRGEID 169
                     455678899****************************************************************************99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGRGKIEIKK IENVSTRQVT FSKRRAGLLK KAHELAVLCD AEVGIIVFSN TGRLYDFSSS  60
SMRGIIDRYN RATEPSTSQL QVEMRQEQAE LETLKNEVAR LRSENARLMG NNLGGTSVQE  120
LHKLEQKLND SLISIKDKKD AMLFEEIERS NRKERELGYE NEVLRGEIDK LTRFIPLTQQ  180
PSQPGFLEYT PAAAGPSSSA GLSRQDRVSP DTVCYYGSDN TDSETALQLR PPCSDHLKMK  240
EEAKRESSSS RSSDSKDMEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-51MIKC_MADS family protein