PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984097.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 375aa MW: 42175.6 Da PI: 7.2682

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984097.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_024984097.1 29 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 83 79****************************************************8 PP
2	Myb_DNA-binding	62.8	6.8e-20	31	82	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+k++ + mg +g+tl+++ks++qky+ XP_024984097.1 31 RLKWTPDLHERFIEAVNQLGGAdkaTPKSVLKLMGiQGLTLYHLKSHLQKYR 82 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSITPERHMF LQGGSGRGNS GLVLSTDAKP RLKWTPDLHE RFIEAVNQLG GADKATPKSV 60 LKLMGIQGLT LYHLKSHLQK YRLGKNLCGQ PNGGGANKIS MVPQARDRMV GTDDIHMSNS 120 SVGPQTNKNL QINEALQMQI EVQRRLHEQL EVQRHLQLRI EAQGKYLQAV LEKAQETVGR 180 QNLGAVGLET AKVQLSELVS KVSTHRLNSA FSGMKDVSNR SNQPTDCSID SCLTYGEGQQ 240 MDQEMMGLNF LNGSSNAPLK SKKVEDEPEN IWCEEMKRNK KFLSSSDLSM SVGLESSEWN 300 TDRSYSEQRF TCRDEDAIFM DQVTRNKTEP IKPENMDITQ KFQLPYFEKK LDLNAHDEND 360 AASSRKQFDL NGLSW

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSITPERHMF LQGGSGRGNS GLVLSTDAKP RLKWTPDLHE RFIEAVNQLG GADKATPKSV  60
LKLMGIQGLT LYHLKSHLQK YRLGKNLCGQ PNGGGANKIS MVPQARDRMV GTDDIHMSNS  120
SVGPQTNKNL QINEALQMQI EVQRRLHEQL EVQRHLQLRI EAQGKYLQAV LEKAQETVGR  180
QNLGAVGLET AKVQLSELVS KVSTHRLNSA FSGMKDVSNR SNQPTDCSID SCLTYGEGQQ  240
MDQEMMGLNF LNGSSNAPLK SKKVEDEPEN IWCEEMKRNK KFLSSSDLSM SVGLESSEWN  300
TDRSYSEQRF TCRDEDAIFM DQVTRNKTEP IKPENMDITQ KFQLPYFEKK LDLNAHDEND  360
AASSRKQFDL NGLSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-123	G2-like family protein