PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984129.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 479aa MW: 53297.9 Da PI: 7.1313

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.4e-17	151	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_024984129.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200 78*****************......55**********************998 PP
2	AP2	43.9	5.8e-14	243	293	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_024984129.1 243 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEIEAARAYDKAAIKCNG 293 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MLDLNLSVDQ SDLTSKYMED DGHKQFLEVC GSGGQLEYSG GTSNSSVVNV EISSNAGDEE 60 HSYSCSDLAY NFDILKPSNR EGDQDFRSGI VETKQLFPEI DGDSGLRQHQ GLDVRGNSAM 120 DEREFMLRQQ QHQQHRQQVR KSRRGPRPRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180 FDTAHAAARA YDRAAIKFRG LDADINFNIS DYEEDLKQIK DLTKEEFVHN LRRQSTGFSR 240 GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDTEIEA ARAYDKAAIK CNGREAVTNF 300 EPSSYEGEPS PEADNRAYNQ SMDLNLGIAP PSLSGGNKAN DTFGSLHQVN PLLADTSEDG 360 RKRIEHSTPV TLGTQMLHAH PPYQSGVVTS GFFPVYQGTA IEKNTKSPNW AWQIQGPYAG 420 VRPASLFSAA AASSGFRNST NAVSSLAAAH HQPPFLASAI PHHPSIKSTS DVPPYFFRS

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MLDLNLSVDQ SDLTSKYMED DGHKQFLEVC GSGGQLEYSG GTSNSSVVNV EISSNAGDEE  60
HSYSCSDLAY NFDILKPSNR EGDQDFRSGI VETKQLFPEI DGDSGLRQHQ GLDVRGNSAM  120
DEREFMLRQQ QHQQHRQQVR KSRRGPRPRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG LDADINFNIS DYEEDLKQIK DLTKEEFVHN LRRQSTGFSR  240
GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDTEIEA ARAYDKAAIK CNGREAVTNF  300
EPSSYEGEPS PEADNRAYNQ SMDLNLGIAP PSLSGGNKAN DTFGSLHQVN PLLADTSEDG  360
RKRIEHSTPV TLGTQMLHAH PPYQSGVVTS GFFPVYQGTA IEKNTKSPNW AWQIQGPYAG  420
VRPASLFSAA AASSGFRNST NAVSSLAAAH HQPPFLASAI PHHPSIKSTS DVPPYFFRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	4e-95	AP2 family protein