PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984161.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 247aa MW: 27710.2 Da PI: 9.3053

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.6	4.3e-15	17	63	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ++ vtfskRr gi+ K +EL +LC+a+ a+++fs+ gk y + XP_024984161.1 17 ITDDKSLAVTFSKRRSGIFRKLSELGTLCGAKTAIVVFSPIGKPYSF 63 55666678**********************************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MMPKKTKGCQ KIEIVKITDD KSLAVTFSKR RSGIFRKLSE LGTLCGAKTA IVVFSPIGKP 60 YSFGHPDVET IVDRYLVTSL FVESRPNANT EALTRQPADM LGHLEVQKKV GKELDEIKKA 120 RERSYWWGAP IETLGFEELE KLKVALLELK KDRGKQAERL MLEAANPTPT IPVYLHLKLS 180 ELGKFCGAET AIVVFSPTGK PYSFGHPDVE MIVDRYLVNS HFVEFHPNAN TEALTRQLAD 240 MLGHLKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-36	M-type_MADS family protein