PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984202.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26601.4 Da    PI: 9.7644
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29.2e-182673249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i+    rqvtfskRr+g++ KA+EL+vL++a++ + + s+ g+++ +
  XP_024984202.1 26 KIQAPNSRQVTFSKRRAGLFRKASELCVLTGAQIGIFVNSPGGRVFAF 73
                    5677788*************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MVTANVAGGV SMNKKTKGRK KIEIKKIQAP NSRQVTFSKR RAGLFRKASE LCVLTGAQIG  60
IFVNSPGGRV FAFGHPNADL LADRYLNQNN IDATSTTVQN YQPPLPAMHL FNFNEHYVKV  120
SRELEMEKKR RELIPAERSS GLQWYEEAVE GMEVEELEQY LSSLELLKKK VVMRADELTM  180
IKKTSTLLGS NLFDQVGWNN HIQTMDIPTT TTTTTTTTTV HHDGFNFHHS GEIGKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein