PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984236.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 426aa MW: 47906 Da PI: 6.8657

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	141	190	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I++ + k+++lg f+ta Aa+a+++a+ k++g XP_024984236.1 141 SQYRGVTYYRRTGRWESHIWE------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190 78*****************......55**********************998 PP
2	AP2	41.4	3.5e-13	233	283	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g XP_024984236.1 233 SKYRGVTLHK-CGRWEARMGQY--L-GKKYIYLGLFDNEIEAARAYDKAAIKCNG 283 89******.7**5552..1.25******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MLDLNLSVDR SDLMSEYMED NGEKQMLELS GGTSSSSVVN MDTLSNAGDE EHSYSCSNLA 60 YSFDILKPNH LEDFQDIRSV MSVTKQLFPA TGRDGGLIQH HWLDNGGGVA ANDRVFILRH 120 QQQQHVQQVK KSRRGPRSRS SQYRGVTYYR RTGRWESHIW ECGKQVYLGG FDTAHAAARA 180 YDRAAIKFRG LDADINFNXS DYEEDLKXIK NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL 240 HKCGRWEARM GQYLGKKYIY LGLFDNEIEA ARAYDKAAIK CNGREAVTNF EPSLYEGELR 300 LEADNGENSQ FMDLNLGIAP PSLTGGSKAD DTLGSLQEIN YILGDMPSQA ARTRIEHHMT 360 LGTRMQYVHP PHHDGVPSCF CPIYEGTAID KSMADKYPPY WAARQVHGGG CGGAPPPSHI 420 FQYNQL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MLDLNLSVDR SDLMSEYMED NGEKQMLELS GGTSSSSVVN MDTLSNAGDE EHSYSCSNLA  60
YSFDILKPNH LEDFQDIRSV MSVTKQLFPA TGRDGGLIQH HWLDNGGGVA ANDRVFILRH  120
QQQQHVQQVK KSRRGPRSRS SQYRGVTYYR RTGRWESHIW ECGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG LDADINFNXS DYEEDLKXIK NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL  240
HKCGRWEARM GQYLGKKYIY LGLFDNEIEA ARAYDKAAIK CNGREAVTNF EPSLYEGELR  300
LEADNGENSQ FMDLNLGIAP PSLTGGSKAD DTLGSLQEIN YILGDMPSQA ARTRIEHHMT  360
LGTRMQYVHP PHHDGVPSCF CPIYEGTAID KSMADKYPPY WAARQVHGGG CGGAPPPSHI  420
FQYNQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-89	AP2 family protein