PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984307.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARR-B
Protein Properties Length: 687aa    MW: 74395.7 Da    PI: 6.6123
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.3e-29226279155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_024984307.1 226 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 279
                     79*******************.********************************8 PP
2Myb_DNA-binding42.51.5e-13228278148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qky+
   XP_024984307.1 228 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 278
                      678***********************************************7 PP
3Response_reg79.41.2e-26511591109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++ +y ev+ +  +e al  l+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a ++++ + + +  G
  XP_024984307.1  51 VLVVDDDPTCLMILEKMLRNCNY-EVTKCNRAEVALSFLRENKngFDVVISDVHMPDMDGFKLLEHIGIEM-DLPVIMMSADDSKSVVMKGVTHG 143
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l++
  XP_024984307.1 144 ACDYLIKPVRIEALRN 159
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    
MNLGGGQVVN KQSVMPSSSG ASWKSTAAGG SGGGGGGDGG VPDQFPAGLR VLVVDDDPTC  60
LMILEKMLRN CNYEVTKCNR AEVALSFLRE NKNGFDVVIS DVHMPDMDGF KLLEHIGIEM  120
DLPVIMMSAD DSKSVVMKGV THGACDYLIK PVRIEALRNI WQHVVRKRKH EWKDFEPSAS  180
ADEQKPPEEP DYSSSANEGH NWKNTKRRKD EDDEGEDRDD SSSLKKPRVV WSVELHQQFV  240
AAVNQLGIDK AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGSQHP GGMNASFMGG  300
PDAGYGSISS LNGLDLQALA ASGQLGQLPP QSLATLQAAA LGRSTNSKSP ISAPVIDQRN  360
IFSFENPKSR YTEVQSQHLT NSSSSKQMNL LPGIPTNMEP KQFVSLQHQS GQHSFGSINN  420
QVLIQMGGQS QSQSHSHSHS HSQGQSNTNP HHGLRPPVLS SEMLTRGGVV DMATTVYNPV  480
VSQASSLVDF SMNHKNDSSG SSYPLGGSLG IPNLASATPT PLQGDGNLDT KVPRRGIVSS  540
YDIFNDINPS GIREWGLQDV GMTFDSAQHT MQGGSGPVLL QHNRSSEREM GGQNRNSTSG  600
KAIFSPGVET GSHRNVGQQR NSYVAENSLR VKAEDGSSHN NTLYPEQYGD DLLAAILKQH  660
HQQQQQGVGQ SETEFGFDGY AMDNLPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-163ARR-B family protein