PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984472.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 246aa MW: 26774.8 Da PI: 6.2943

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.3e-39	42	143	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v+++l+lqqq++ l++el XP_024984472.1 42 PCGACKFLRRKCVNGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLMHIPVNRRQHAVVTISYEAQARLSDPVYGCVSTVLALQQQVAALQTEL 136 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 +++++l XP_024984472.1 137 TMVQNQL 143 *9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MADTHADGMS SDTRRKGPGV GKRTVASFEA ATSETGSIPN PPCGACKFLR RKCVNGCIFA 60 PYFGSDQGAA RFAAVHKVFG ASNVSKLLMH IPVNRRQHAV VTISYEAQAR LSDPVYGCVS 120 TVLALQQQVA ALQTELTMVQ NQLINNRLLV ANSLQSSQQQ LEPVHHLSLL RPAYSNASSA 180 SNNNILNMNS FDSSLNNLAD DHHRDTLSQQ SFNPLQLCQP CNDDEDDDEE ESGDPLAFAN 240 QMLQSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-56	LBD family protein