PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984568.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 369aa    MW: 41974.4 Da    PI: 8.3742
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-06205224120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp+C+k F+r  nL+ H+
  XP_024984568.1 205 FSCPICSKNFTRYNNLQMHM 224
                     89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MTNPIFFKGW VPFISHHPYN YWHYSSDNEP SPSYLHHNMS LQSSLSSSSS PPLKEAVPLL  60
SKLSLKKDLE LQHHDPSSNS AMEEDKNNCR FSTSTTTKLL TSTTVNVTLN IGLPTSPIYP  120
SYPQEKVTSN GDEMLLEFPF CPEKKGGNGD EMLLGFHWGP NGFEEKNVNG DEMLQGFPIN  180
RLKKTNGLQY WIPNPSQILT GPNQFSCPIC SKNFTRYNNL QMHMWGHGSQ YRKGPESLRG  240
SQPTSMPKLP CYCCVLGCKH HIDHPRSRPL KDFKTLQTHY KRKHGTKTFV CRKCGKAIAV  300
KGDWRTHEKN CGRVWYCNCG SDFKHKRSLK DHVKVFGHGH GHGGAYGIDF IQQQEDDEDE  360
GMLSEIEHM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-92C2H2 family protein