PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984594.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 309aa    MW: 32467.4 Da    PI: 9.7688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-061101221527
                     -TTTTT-SS-SSS CS
         zf-CCCH  15 CkyGdrCkFaHgp 27 
                     Ck+Gd+C+FaH++
  XP_024984594.1 110 CKFGDKCRFAHSE 122
                     ***********95 PP
2zf-CCCH34.43.8e-11280304227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C +fa+ G+C +G+rC+FaHgp
  XP_024984594.1 280 KTKMCENFAK-GQCTFGERCHFAHGP 304
                     899*******.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MDFGGRKRGR QDGGWNGAPK RPRDETESFT PGVGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGYSAVKQ FTNVGGPLGR KAPMQQPFAD GPATPVKSKL CNKINTPEGC KFGDKCRFAH  120
SEVELGSKSS FPSYEDSRGQ PGPINYGGGG GYQGRMEPAP PGLAAAANFG QSATAKISID  180
ASLAGPIIGK GGVNSKQICR LTGVKLAIRD HDTDQNQRNI ELEGTFDQIK QASAMVHELI  240
VNLGSGGGGA NGPSARKSGG GFQQQQQGGG MGHGGANKIK TKMCENFAKG QCTFGERCHF  300
AHGPNELRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-45C3H family protein