PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984656.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 353aa MW: 39573 Da PI: 7.3648

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	192	211	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C ksF+r n++ H+ XP_024984656.1 192 FSCPLCFKSFNRYNNMQMHM 211 89*****************9 PP
2	zf-C2H2	17.1	1.5e-05	276	298	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk+F + + ++H +++ XP_024984656.1 276 FMCHKCGKPFAVRGDWRTHEKNC 298 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MSNDQSYSTY MNASWLILNP HYQYLSSSSA AAASSSSSVH PPLSYSSLTN YHQLSPPSPP 60 LREALPLLSL SPTRRPNPNH QQTTSTTNNA CSTTTTAMGV HRHKNTDNNC NDNTVTVSLH 120 LGLPSLTLSE ADLISRLSST NDDYKQMEGG EDEEEEEDQD GTNSVGLVTS TLNKGQYWIP 180 TPSQILIGPN QFSCPLCFKS FNRYNNMQMH MWGHGSQYRR GPESLRGRQP SGMLRLPCYC 240 CAPGCCNNID HPRAKPLKDF RTLQTHYKRK HGDKPFMCHK CGKPFAVRGD WRTHEKNCGK 300 IWYCSCGSDF KHKRSLKDHV KAFGNGHGAF EVDHTCCFEV EQEDDTASEI NEQ

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MSNDQSYSTY MNASWLILNP HYQYLSSSSA AAASSSSSVH PPLSYSSLTN YHQLSPPSPP  60
LREALPLLSL SPTRRPNPNH QQTTSTTNNA CSTTTTAMGV HRHKNTDNNC NDNTVTVSLH  120
LGLPSLTLSE ADLISRLSST NDDYKQMEGG EDEEEEEDQD GTNSVGLVTS TLNKGQYWIP  180
TPSQILIGPN QFSCPLCFKS FNRYNNMQMH MWGHGSQYRR GPESLRGRQP SGMLRLPCYC  240
CAPGCCNNID HPRAKPLKDF RTLQTHYKRK HGDKPFMCHK CGKPFAVRGD WRTHEKNCGK  300
IWYCSCGSDF KHKRSLKDHV KAFGNGHGAF EVDHTCCFEV EQEDDTASEI NEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein