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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_024984713.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 226aa MW: 25659.6 Da PI: 8.7489 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 39.8 | 9.7e-13 | 119 | 210 | 8 | 99 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
++ie+++ ++P+ r+ +i+k+++ +is ea ++ ka e f+ +t ++ a +++ + +++++++ fdfl d vp++
XP_024984713.1 119 EEIEEKESSSLYQIPMNRVSRIIKSEDPNIRISQEAVFIINKASEKFLQLFTTEAYASAFLDRKKHIDYKHLSSVISKRRRFDFLSDFVPEK 210
568888888899************9988889**********************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 226 aa Download sequence |
MEEEQKAERG GSTPAPAKAN GKRKVKKDFE EENTPDKVPI ILSSSSNSHN HVNNGAKSES 60 SEEEEQRQVE VSGEKDVVDD SVEAEDAANS TDASNKKKKA KKEVKEDKNQ KKKKKKRKEE 120 IEEKESSSLY QIPMNRVSRI IKSEDPNIRI SQEAVFIINK ASEKFLQLFT TEAYASAFLD 180 RKKHIDYKHL SSVISKRRRF DFLSDFVPEK VKAEDALKES SPTVET |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 96 | 118 | KKKKAKKEVKEDKNQKKKKKKRK |
| 2 | 97 | 119 | KKKKAKKEVKEDKNQKKKKKKRK |
| 3 | 98 | 118 | KKAKKEVKEDKNQKKKKKKRK |
| 4 | 110 | 118 | QKKKKKKRK |
| 5 | 111 | 117 | KKKKKKR |
| 6 | 112 | 118 | KKKKKKR |
| 7 | 113 | 118 | KKKKRK |
| 8 | 181 | 203 | KKKKAKKEVKEDKNQKKKKKKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G07980.1 | 1e-28 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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