PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984815.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28696.1 Da    PI: 6.8875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2074127356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++++eqle+Le+ F+++++++ +++ +LA++lgL+ rq+ vWFqNrRa++k
  XP_024984815.1  74 KKKRLSSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWK 127
                     56679************************************************9 PP
2HD-ZIP_I/II116.81.3e-3773165193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekk+rls+eq+++LE++F+ee+kL+p+ K++la+eLglqprq+avWFqnrRAR+k+kqlE  y+ Lk+++da+++e+++L++ev +Lr+ lke
  XP_024984815.1  73 EKKKRLSSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWKAKQLECLYDNLKQEFDAVSREKQKLQEEVLALRTILKE 165
                     69**************************************************************************************87775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MEWNSGNPSS RPFIPRSAPQ SSFAFLYNYN NDHYVYPPGV GEMKHQMMQG AVPAGALAMM  60
EMNANEYDNN NQEKKKRLSS EQLEALENTF QEEKKLDPDT KMKLAHELGL QPRQIAVWFQ  120
NRRARWKAKQ LECLYDNLKQ EFDAVSREKQ KLQEEVLALR TILKEQVSKR QGAGSSTGYT  180
YISGEETVES TSVATIRTTT NHHPHQLTLG GQHATTTTAA AAAMDCNYVL NYDPATSMPP  240
TPSYSNWAVL PTYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
174103KKKRLSSEQLEALENTFQEEKKLDPDTKMK
2122130RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-53HD-ZIP family protein