PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984833.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 317aa    MW: 35193.5 Da    PI: 4.7917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-185098355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  XP_024984833.1 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 98
                    56******.**********965...5************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MSTSKSSSKL KSLETNSHID MGFTILQRNT SIPQPTERRG RKKEAEPGRF LGVRRRPWGR  60
YAAEIRDPTT KERHWLGTFD TAQEAALAYD RAALSMKGTQ ARTNFIYATD HDNTNFHSLI  120
SPLDVQTLFQ PAQLFNTPPA HHQATSTKQP INPTVLPQNP DQSGLDTCYQ SSIDDHRNFF  180
MSEGDNSGYL GCIVPDDYLN PRSNHGNNVD ISPGDPTGQC SYWDQSNQLF PSNEGEVYGD  240
IWGGSESSWE TMNGYDLSAI VNYPTPSLMD DEEASMTGLY DSNPSYDLMA GASSNVTNSS  300
PRTSCSYSDI VGIRYSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.18e-53ERF family protein