PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984870.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 454aa MW: 49756.7 Da PI: 8.832

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024984870.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12	0.00063	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_024984870.1 143 WKCEKCSKKYAVQSDWKAHSKIC 165 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MMSGGDGFNS SSPSSLTASL IQDPISNPNP NSSSSAKRKR NLPGTPDPDA EVIALSPRSL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKL EVVKKKVYIC PEKSCVHHDP 120 SRALGDLTGV KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR 180 KDSFITHRAF CDALTEENSR MASFPMMSST AHLNFRNDLM MINGGGGGGQ LRFPGMFGGG 240 MLESTNLDAN GAKPRLPIWL DQHGNESHLE NPSNSSFLGS SSSNNNNNGG ILPSEMVQWL 300 NGGQETVATY SGLHLKEEDN KGEMQFNSLY NNYTTSNTTP PPPPPPPPPA HMSATALLQK 360 AAQMGSTRST NGGATDQGFG LMTTSLSNFS SSNHHDINGD GLMMMMTGSK QSKGNESISH 420 DGNLTRDFLG VGGNERRPFD LQQELFNFSS SMEN

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MMSGGDGFNS SSPSSLTASL IQDPISNPNP NSSSSAKRKR NLPGTPDPDA EVIALSPRSL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKL EVVKKKVYIC PEKSCVHHDP  120
SRALGDLTGV KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  180
KDSFITHRAF CDALTEENSR MASFPMMSST AHLNFRNDLM MINGGGGGGQ LRFPGMFGGG  240
MLESTNLDAN GAKPRLPIWL DQHGNESHLE NPSNSSFLGS SSSNNNNNGG ILPSEMVQWL  300
NGGQETVATY SGLHLKEEDN KGEMQFNSLY NNYTTSNTTP PPPPPPPPPA HMSATALLQK  360
AAQMGSTRST NGGATDQGFG LMTTSLSNFS SSNHHDINGD GLMMMMTGSK QSKGNESISH  420
DGNLTRDFLG VGGNERRPFD LQQELFNFSS SMEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-103	C2H2 family protein