PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985067.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 779aa    MW: 85315 Da    PI: 6.549
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23158259199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_024985067.1 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 249
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++ +r+
  XP_024985067.1 250 GELRLGTRRA 259
                     9999999986 PP
2Auxin_resp104.61.2e-34284365182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+s +++F+v+Y+Pr+ +++F+v++ k+ + +++ +++G+Rfkm+f +++s+err+ G v+gvsd+dp++Wp+SkWr+L
  XP_024985067.1 284 VANAVSANTIFHVFYSPRSNRADFIVPYVKYINCISNMITIGTRFKMRFSMDESPERRFRGSVTGVSDMDPYKWPKSKWRCL 365
                     689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    
MEIDLNHAAS GIEEVYSVDS CGNGGDSSLS ASSNSSNSSL KSSNPNFSSS IYMELWHACA  60
GPLTTLPNKG NVVVYFPQGH LEQIASHSSI QFSPIEVPSL GLHPQIFCKV VDVQLLANKE  120
NDEIYTKISL LPLPEENLQE GEEEGGGGTL TKSTPQMFCK TLTASDTSTH GGFSVPRRAA  180
EDCFPPLDYK QQRPSQELVA KDLHGVEWKF RHIYRGQPRR HLLTTGWSIF VSQKNLVSGD  240
AVLFLRGEGG ELRLGTRRAT RPRNVLPDTI MPNSDSFTDI LAPVANAVSA NTIFHVFYSP  300
RSNRADFIVP YVKYINCISN MITIGTRFKM RFSMDESPER RFRGSVTGVS DMDPYKWPKS  360
KWRCLTVRWD EDVGNNNQER ISPWEIDLSG APVPLLSIHP SLRFKKMRAN LHPSEHPMAG  420
WGGCLDFEES TRSSKVLQGQ ENAGGKMNNP LNFGVQPSIH SGFSPNQMLL TGRSTNIVGE  480
LVRAHHQPPS TTPYSGFMGS NNSRYPKVLQ GQEICSLRSL TGKTNGSWGA PRTDLGMHQR  540
LSNPGFYPLG SEGGRNFCFP NPGSVMRTSL PGFPINRAAF GNGVAADDIN GIQLQPPVEL  600
GKTTVDPIME ANSGSEKDDG GSDSMGSSCK LFGFHLNGGA PPIPDAQSLS KRSCTKVHKQ  660
GNKVGRAIDL SKMSSYDELF SELETLFQME GVLSNRVGTW RLLYTDEEND MMVVGDDPWD  720
EFARMATKIH IHTKEEVEKL MSGGVISDDT SCLEEAPAIA MVDTAKSGSA GVILRSPSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein