PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985214.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 1079aa MW: 119173 Da PI: 6.4768

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_024985214.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_024985214.1 226 QQLLLGIRRA 235 889**997 PP
2	Auxin_resp	116.7	1.9e-38	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdld vrW+nS+Wr+L+ XP_024985214.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDAVRWKNSQWRNLQ 343 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1079 aa Download sequence
MKAPANASGS TLTMENPGEG GEKKSIINPE LWQTCAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLQS KLLCILHGVT LHADPETDEV YAQMTLQPVP SFDKEALLRS 120 DLSMKINKPQ TQFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH 180 DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCSNQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD AVRWKNSQWR NLQVGWDEST AGERRTRVSI 360 WEIEPVTAPF FICPTPPFYR PKRPRQPGMP DDESADLDNF FKRTMPWLGE DMSTKDPGLS 420 LVQWMNMQQS SIQPNYLNPL SGSVLQNYGG QDLSRQLGLS APQMLNQNTI QFNSQRSAMQ 480 LDQLQKLPQA APMVQPQQQL ADPNQQLMRQ NVINQTLPQN QNQPQIHPQN VLQQQSSIQN 540 HHLYRNFQQQ QQTVAVSQSQ QNNLLPPQFP DQQVSQQLQM PDNQIPLQLL QKLHQQQQSL 600 LAQQPPQQRS QLVQPPQDQQ KPLMDASQSF SRSVSTSQTM DTAPQQMSRN NSQANLRFSH 660 LPQQSNLHSN QQFSGQMAGS TPTQTHQLST NGSSLMTGTA GGGGGGQSGI TDDVPSCSTS 720 PSTNNCPTMV PSMINGRSYM STTMGGEEMT QASAHLMNTG VATVSANVHN FGKSCQQNAP 780 SVNIAKSHNQ GLLSPLTYLH NIAGTQMDFL DSSSSATSVC VPQNDLHLQH QNSNQLSSNS 840 QPIVPPRDAI QDGEVQNDPR TDIPFGVNMD NHLGMPSMIL DPLTTKGMVG SSKDFQNNLS 900 PGGMILSYEN PTKDTQPELS SSMVSQPFGV PDMAFNPIDS TLNDNSLLNS GVWAPPPPQQ 960 FQRMRTYTKV YKRGAVGRSI DISGYSGYED LKQDLARRFG IEGELEDGQR VGWKLVYVDH 1020 ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG GNSGVLPNQA CSSSDGGNI

Sequence ? help Back to Top

Protein Sequence Length: 1079 aa Download sequence

MKAPANASGS TLTMENPGEG GEKKSIINPE LWQTCAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLQS KLLCILHGVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKINKPQ TQFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD AVRWKNSQWR NLQVGWDEST AGERRTRVSI  360
WEIEPVTAPF FICPTPPFYR PKRPRQPGMP DDESADLDNF FKRTMPWLGE DMSTKDPGLS  420
LVQWMNMQQS SIQPNYLNPL SGSVLQNYGG QDLSRQLGLS APQMLNQNTI QFNSQRSAMQ  480
LDQLQKLPQA APMVQPQQQL ADPNQQLMRQ NVINQTLPQN QNQPQIHPQN VLQQQSSIQN  540
HHLYRNFQQQ QQTVAVSQSQ QNNLLPPQFP DQQVSQQLQM PDNQIPLQLL QKLHQQQQSL  600
LAQQPPQQRS QLVQPPQDQQ KPLMDASQSF SRSVSTSQTM DTAPQQMSRN NSQANLRFSH  660
LPQQSNLHSN QQFSGQMAGS TPTQTHQLST NGSSLMTGTA GGGGGGQSGI TDDVPSCSTS  720
PSTNNCPTMV PSMINGRSYM STTMGGEEMT QASAHLMNTG VATVSANVHN FGKSCQQNAP  780
SVNIAKSHNQ GLLSPLTYLH NIAGTQMDFL DSSSSATSVC VPQNDLHLQH QNSNQLSSNS  840
QPIVPPRDAI QDGEVQNDPR TDIPFGVNMD NHLGMPSMIL DPLTTKGMVG SSKDFQNNLS  900
PGGMILSYEN PTKDTQPELS SSMVSQPFGV PDMAFNPIDS TLNDNSLLNS GVWAPPPPQQ  960
FQRMRTYTKV YKRGAVGRSI DISGYSGYED LKQDLARRFG IEGELEDGQR VGWKLVYVDH  1020
ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG GNSGVLPNQA CSSSDGGNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein