PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985226.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 616aa    MW: 69307.3 Da    PI: 6.6412
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24125225198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_024985226.1 125 FCKVLTASDTSTHGGFSVLRKHANEClpildMAQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 217
                     99*****************************667777789************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_024985226.1 218 ELRVGVRR 225
                     9*****98 PP
2Auxin_resp1003.1e-33251330183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+s F v+Y+Pr+  s+F++ ++k+ +++++ ++vGmRf m+fe+eds+err++Gt++gv+dl+  +W+ SkWrsLk
  XP_024985226.1 251 ASHAVSTQSRFVVYYKPRT--SQFIIGLNKYIESINNGFTVGMRFNMRFEGEDSPERRFTGTIIGVEDLSH-QWECSKWRSLK 330
                     789***************6..9**********************************************766.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    
MYLSTMDNRG STVFSSEDLL YKELWKACAG PLVDVPRDGE RVFYFPQGHM EQLEASTNQE  60
SDQSIPRFDL NSKILCSVVH TQLLAEQDTD EVYAQITLLP EPDQSDPASP DKCLADPPRP  120
TVHSFCKVLT ASDTSTHGGF SVLRKHANEC LPILDMAQPT PTQELVAKDL HGFEWRFKHI  180
FRGQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGENGELR VGVRRVAQQH NSMPSSVISS  240
RSMRLGMLAT ASHAVSTQSR FVVYYKPRTS QFIIGLNKYI ESINNGFTVG MRFNMRFEGE  300
DSPERRFTGT IIGVEDLSHQ WECSKWRSLK VQWDESTSIT RPERVSPWEI EAYTTPVPTS  360
LVQPVAPKSK RPRPSVNIPN LEPACSTVSA VWNPSHEQTE NGETEERKGL LGWSVHSHSN  420
YAPLESAKLT KDSIKSSHDL KKSENILSCR LFGFDLKIAP KGDIPKVAPS FERHESDGIS  480
DQKPDHPSKD HKGGQSKQSA LSRSRTKVQM QGVAVGRAVD LTVLKGYHEL IDELEEMFEI  540
KGKLRPRNEW EIVFTDDEGD MMLMGDDPWQ EFCRMVKRIL ICSSQDVKKM SCGSKLQLSS  600
SIDNEVSGFS LEAAEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0ARF family protein