PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985250.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 246aa MW: 28840.6 Da PI: 7.8092

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv+ v+++G g+W+++a g++R +k+c++rw +yl XP_024985250.1 15 KGPWTPEEDRLLVHHVNLHGEGRWNSVATLSGLKRNGKSCRLRWVNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56	8.9e-18	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ XP_024985250.1 68 RGRITPHEETIILDLHARWGNR-WSTIARSLP-GRTDNEIKNHWRTH 112 899*****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MYWGVMGGAE ERWRKGPWTP EEDRLLVHHV NLHGEGRWNS VATLSGLKRN GKSCRLRWVN 60 YLRPDLKRGR ITPHEETIIL DLHARWGNRW STIARSLPGR TDNEIKNHWR THFKKKSKVS 120 LDESTKLKTK LLKRQKFQQE QRLQQQQLLD QVQQNEADMK KIMSLVVEES TESSPTMVVR 180 EEEEEEEESL IHGMILLNGW FYAPAADHQS SMINQDVGMW DGLWNLDDVH GTNFSATYHQ 240 APCLNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	7e-76	MYB family protein