PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985357.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 336aa    MW: 37965.1 Da    PI: 8.781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_024985357.1 181 HYCQVCGKGFKRDANLRMHMRAH 203
                     68*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MAAFCFSNTF DHHQSTINDS LIFNLSLLLD KTQQLQSRAT IFFAQTPSSM ASSDHSTSNS  60
PENMENVAGL LQEIISIVFN VISTCQNISQ NDANNQINNV NNTHNDMIIG FDQLTQSNPI  120
FDQWSAGGVD QNSILGNAKC STRNDDVTGL DQKKKQKEIL WQKNYDIVEM EAAELLAKYT  180
HYCQVCGKGF KRDANLRMHM RAHGDEYKST AALVKPVVIN GCSTTSMRKY SCPQEGCRWN  240
RKHPKFQPLK SMICMKNHYK RSHCPKLYAC KRCNGKQFSV VSDLRTHEKH CGDVKWRCSC  300
GTTFSRKDKL MGHVGLFLGH TPVVDYNKST SLIKSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-98C2H2 family protein