PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985406.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 400aa MW: 45139.9 Da PI: 7.8527

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56	1e-17	124	173	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_024985406.1 124 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDQAAIKFRG 173 78*****************......55**********************998 PP
2	AP2	42.8	1.3e-13	216	266	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++k grW+A+ + +k+++lg f+++ eAa+a+++ + k++g XP_024985406.1 216 SKYRGVTRHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKTAIKFNG 266 89***999.7**5553..2.26******99********99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MPECMAESGT QFRELCGGSG SGGKLQYSGV TSNSSVVNVE PTSNAGDEEH MYPCLNLEYN 60 FDILKQNNLE DDKNVRSGIF VTKQLFPDGC SSVAERELNL RQQYYQQYNQ QIKKNRRGPR 120 SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDQAAIK FRGLDADTNF 180 NPNDYQEDLK QIRNLTKEEF VHIIRRQSNG FSRGSSKYRG VTRHKCGRWE ARMGQFLGKK 240 YIYLGLFDSE IEAARAYDKT AIKFNGREAL TNFEPSSYKG EPTPETENDA YSQSMDLNLG 300 IAPPSFRSSN YTKYTSGSLH QINHLLGDMS EAERTRIEPS TSMTLGTQMP LVHPPDRNSG 360 TSIEERKEVD LNRGWQLQDP YGGATPASLF SAAASSGFNH

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MPECMAESGT QFRELCGGSG SGGKLQYSGV TSNSSVVNVE PTSNAGDEEH MYPCLNLEYN  60
FDILKQNNLE DDKNVRSGIF VTKQLFPDGC SSVAERELNL RQQYYQQYNQ QIKKNRRGPR  120
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDQAAIK FRGLDADTNF  180
NPNDYQEDLK QIRNLTKEEF VHIIRRQSNG FSRGSSKYRG VTRHKCGRWE ARMGQFLGKK  240
YIYLGLFDSE IEAARAYDKT AIKFNGREAL TNFEPSSYKG EPTPETENDA YSQSMDLNLG  300
IAPPSFRSSN YTKYTSGSLH QINHLLGDMS EAERTRIEPS TSMTLGTQMP LVHPPDRNSG  360
TSIEERKEVD LNRGWQLQDP YGGATPASLF SAAASSGFNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	4e-91	AP2 family protein