PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985436.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 237aa MW: 27759.1 Da PI: 6.1009

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.1e-16	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W eEde+l vk lG ++W++ a++ g++R++k+c++rw +yl XP_024985436.1 11 RGPWLDEEDERLTTIVKALGDKNWDALANESGLRRSGKSCRLRWMNYL 58 89********************************************97 PP
2	Myb_DNA-binding	51.5	2.3e-16	66	109	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T eE+ ++++++kq+G++ W++Ia++++ gRt++++k++w+++l XP_024985436.1 66 EITYEEEHIILNLHKQWGNK-WSRIAKRLP-GRTDNEIKNYWRSHL 109 5689**************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MANRDVGNLR RGPWLDEEDE RLTTIVKALG DKNWDALANE SGLRRSGKSC RLRWMNYLRP 60 NLKHGEITYE EEHIILNLHK QWGNKWSRIA KRLPGRTDNE IKNYWRSHLK KKTEAQQGTR 120 NVAEQDLSTP KCHRSPEYII GENERDGVFG TSSTEAPEIS SNMSAFGCSS PYERQITDWM 180 SSCCWLLHDD NQLQTYEIKQ HEDYMGMYPC FCQPESKPEE DMMHNVCDLW SPIWEMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	8e-56	MYB family protein