PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985467.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family FAR1
Protein Properties Length: 254aa    MW: 28928.5 Da    PI: 6.1906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.52.7e-2989176291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkwe+tk+++eH+H+l+p
  XP_024985467.1  89 FYNAYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KVVRQRAETRVGCRAMILVRKVSSGKWEITKFVKEHTHPLTP 176
                     ******************************************9988..999************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MDFEVDDDVN GEVLVNSADV EGRTVDDDGT VGCSVVGIFQ DDHDIKIDQD ELERGIDPLD  60
EPHAVNGSLL GAEPYLGQEF ESEAAAHAFY NAYATRVGFV IRVSKLSRSR RDGTAIGRAL  120
VCNKEGFRMP DKREKVVRQR AETRVGCRAM ILVRKVSSGK WEITKFVKEH THPLTPGKGR  180
RDLIYDQYPN EHDKIRELSQ QLAIEKRRAA TYKRHLEMVF EHIEEHNQSL SKKIKDIVNS  240
VKEMESNELL QSHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-92FAR1 family protein