PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985564.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 232aa MW: 26626.3 Da PI: 9.5356

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEdell ++k+ G g+W+t + + g+ R++k+c++rw +yl XP_024985564.1 42 KGPWTPEEDELLSTYIKKEGEGRWRTLPDKAGLLRCGKSCRLRWMNYL 89 79****************************99**********97 PP
2	Myb_DNA-binding	49	1.4e-15	95	139	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ XP_024985564.1 95 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNDIKNYWNTC 139 67779***************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MDNKGKSYYL MQLSSFVYIN YTTSYILAWR RRAEKMRGMK KKGPWTPEED ELLSTYIKKE 60 GEGRWRTLPD KAGLLRCGKS CRLRWMNYLR PSLKRGHISP DEEDLILRLH RLLGNRWSLI 120 AGRIPGRTDN DIKNYWNTCL SKKLISRGID PRTHKPLSSS LAPDRKNICL SSPEEISPEN 180 RSSSSTANDQ ICSPDDAFSS FLDSLINEEM CSEITAARPA DASKNQHVVL EN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	9e-72	MYB family protein