PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985839.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 548aa MW: 59778.4 Da PI: 7.138

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	282	340	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r aed++++++tYeg+Hnh+ XP_024985839.1 282 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRWAEDQTILITTYEGTHNHP 340 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MGKYSLRPTL DTSEPLLLLN QNNTRWNPFA MAHGGAAASP PYHVAAEGEN SHRKVLAEMD 60 LFSTRNQISN KVVVKNENFH ANDLDVNTGL NLVTQSDRFD GISSNGDENR TTNKLANLQN 120 ELQQMNIENQ RLKEMYLQVS NNYNALQMHL VTLMQQQEQE MRNASIQNQD QNVDRPSHQG 180 PVTVPRQFME LRQSTNEMTS RDSSSEEKTQ SGSALNAVEL SKNVDRDGKS TIGREDTPDS 240 DVWMSNKVPK LVVPENADQA NEATMRKVRV SVRARSEAPM ITDGCQWRKY GQKMAKGNPC 300 PRAYYRCTMA VGCPVRKQVQ RWAEDQTILI TTYEGTHNHP LPPAAVAMAS TTSAAATMLL 360 SGSISSADGF MNPNLLAHAI RPNSSGIATI SASAPFPTIT LDLTHPPNTF QGPNSSIQFD 420 GHHQPPSQFP PSALAMPLQA FHHGGGGATL YNQSRFSGLQ LSNNKVISNQ PPPHQIATPQ 480 LHQSQLSNSI SAATAAITAD PNFTAALAAA ITSIMGGGGN NNGANTFPSN NNNETNNTYS 540 SKHDQQLQ

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MGKYSLRPTL DTSEPLLLLN QNNTRWNPFA MAHGGAAASP PYHVAAEGEN SHRKVLAEMD  60
LFSTRNQISN KVVVKNENFH ANDLDVNTGL NLVTQSDRFD GISSNGDENR TTNKLANLQN  120
ELQQMNIENQ RLKEMYLQVS NNYNALQMHL VTLMQQQEQE MRNASIQNQD QNVDRPSHQG  180
PVTVPRQFME LRQSTNEMTS RDSSSEEKTQ SGSALNAVEL SKNVDRDGKS TIGREDTPDS  240
DVWMSNKVPK LVVPENADQA NEATMRKVRV SVRARSEAPM ITDGCQWRKY GQKMAKGNPC  300
PRAYYRCTMA VGCPVRKQVQ RWAEDQTILI TTYEGTHNHP LPPAAVAMAS TTSAAATMLL  360
SGSISSADGF MNPNLLAHAI RPNSSGIATI SASAPFPTIT LDLTHPPNTF QGPNSSIQFD  420
GHHQPPSQFP PSALAMPLQA FHHGGGGATL YNQSRFSGLQ LSNNKVISNQ PPPHQIATPQ  480
LHQSQLSNSI SAATAAITAD PNFTAALAAA ITSIMGGGGN NNGANTFPSN NNNETNNTYS  540
SKHDQQLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-114	WRKY family protein