PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985875.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 247aa    MW: 27207.4 Da    PI: 4.9504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1976126155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_024985875.1  76 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 126
                     68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MTATLSPFTY ALMKNGATIC AKLSIENSIS EPDDHCSSNS CTTSPSSLGS TQPLPNSQNP  60
ETRTVKRNRD STSKHPVYRG VRMRSWGKWV SEIREPRKKS RIWLGTFPTP EMAARAHDVA  120
ALSIKGNSAM LNFPELVGSL PRPASCSPRD VQAAAAKAAA MTEFDFPSSS IETASEELDQ  180
IIELPVLGSS FDSLELKNDF VYTDLVADGW LYPPPWMNRG GDQEDGYVVS GQENVISTAF  240
ESFWWNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-61ERF family protein