PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985884.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARR-B
Protein Properties Length: 535aa    MW: 60438.8 Da    PI: 6.1046
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.4e-26297350255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 
                      +++Wt+eLH++Fv+aveqL G ++A+P++ilelm+v+gLt+++v+SHLQ kYRl
  XP_024985884.1 297 IKVDWTSELHKKFVQAVEQL-GVDQAIPSRILELMNVEGLTRHNVASHLQqKYRL 350
                     5899****************.****************************649**8 PP
2Myb_DNA-binding39.21.7e-12299346246
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 
                        WT e+++++v+av+qlG +   +++I + m+ +g+t+ ++ s++q+
   XP_024985884.1 299 VDWTSELHKKFVQAVEQLGVDqaIPSRILELMNvEGLTRHNVASHLQQ 346
                      57********************************************96 PP
3Response_reg23.52.8e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++ + +  +r+ le+ gy +v  + +  eal  + ++   +++ ++ ++  + d  + +k +++++ +lp i+ ++ +  +++ +++ +G
  XP_024985884.1  20 VLLLDEDIDSAAEIRSKLEEMGY-SVSMFFSENEALSAISDNSngFHVAIVEVRAENED--RRFKFLESAK-DLPTIMNSDVNCLSTMMKCIALG 110
                     7899999999999**********.999999999999999777779**********9977..4455555544.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl+Kp ++++l++
  XP_024985884.1 111 AVEFLEKPLSEDKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MVCTANDLLG WKDFPKGLRV LLLDEDIDSA AEIRSKLEEM GYSVSMFFSE NEALSAISDN  60
SNGFHVAIVE VRAENEDRRF KFLESAKDLP TIMNSDVNCL STMMKCIALG AVEFLEKPLS  120
EDKLRNIWQH VAHKAFAGLK DQSERLQSEK ALAASVLEVH MEQKDIKEEC NKNQEHNEEV  180
SVESDKYPAP STPQLKQGIR LVDNGDCQDQ DQDQTNRSPE KECVDHDGES KFVETTCDNL  240
VVETTIEMNS AKSLEEGIDK PANDECGLDS KNDGKKRNEA SEHRSNSRGT KSSRRKIKVD  300
WTSELHKKFV QAVEQLGVDQ AIPSRILELM NVEGLTRHNV ASHLQQKYRL QRRHILPKES  360
GRKWPQTRHS TPRSYYPQKP IVAYPPYHSN HALSGSQVYP AWPPPHSYPP PPQMWGSPYY  420
PAWQSSESWM WNPYSGVQAD AWGCPTVPPQ PTFPQNVSQF QGRDSMQSSQ SIPKPSSDHF  480
PGDEVIDKVV KEAINKPWLP LPLGLKPPST ESVIYELSKQ GISTVPPRIN GSRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-114ARR-B family protein