PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985885.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 534aa MW: 60310.6 Da PI: 6.1046

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.1	8.3e-28	297	349	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +++Wt+eLH++Fv+aveqL G ++A+P++ilelm+v+gLt+++v+SHLQkYRl XP_024985885.1 297 IKVDWTSELHKKFVQAVEQL-GVDQAIPSRILELMNVEGLTRHNVASHLQKYRL 349 5899**************.******************************8 PP
2	Myb_DNA-binding	44.2	4.3e-14	299	348	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT e+++++v+av+qlG + +++I + m+ +g+t+ ++ s++qky+ XP_024985885.1 299 VDWTSELHKKFVQAVEQLGVDqaIPSRILELMNvEGLTRHNVASHLQKYR 348 57***********************************************7 PP
3	Response_reg	23.5	2.8e-09	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + + +r+ le+ gy +v + + eal + ++ +++ ++ ++ + d + +k +++++ +lp i+ ++ + +++ +++ +G XP_024985885.1 20 VLLLDEDIDSAAEIRSKLEEMGY-SVSMFFSENEALSAISDNSngFHVAIVEVRAENED--RRFKFLESAK-DLPTIMNSDVNCLSTMMKCIALG 110 7899999999999********.999999999999999777779******9977..4455555544.9****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl+Kp ++++l++ XP_024985885.1 111 AVEFLEKPLSEDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MVCTANDLLG WKDFPKGLRV LLLDEDIDSA AEIRSKLEEM GYSVSMFFSE NEALSAISDN 60 SNGFHVAIVE VRAENEDRRF KFLESAKDLP TIMNSDVNCL STMMKCIALG AVEFLEKPLS 120 EDKLRNIWQH VAHKAFAGLK DQSERLQSEK ALAASVLEVH MEQKDIKEEC NKNQEHNEEV 180 SVESDKYPAP STPQLKQGIR LVDNGDCQDQ DQDQTNRSPE KECVDHDGES KFVETTCDNL 240 VVETTIEMNS AKSLEEGIDK PANDECGLDS KNDGKKRNEA SEHRSNSRGT KSSRRKIKVD 300 WTSELHKKFV QAVEQLGVDQ AIPSRILELM NVEGLTRHNV ASHLQKYRLQ RRHILPKESG 360 RKWPQTRHST PRSYYPQKPI VAYPPYHSNH ALSGSQVYPA WPPPHSYPPP PQMWGSPYYP 420 AWQSSESWMW NPYSGVQADA WGCPTVPPQP TFPQNVSQFQ GRDSMQSSQS IPKPSSDHFP 480 GDEVIDKVVK EAINKPWLPL PLGLKPPSTE SVIYELSKQG ISTVPPRING SRQR

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MVCTANDLLG WKDFPKGLRV LLLDEDIDSA AEIRSKLEEM GYSVSMFFSE NEALSAISDN  60
SNGFHVAIVE VRAENEDRRF KFLESAKDLP TIMNSDVNCL STMMKCIALG AVEFLEKPLS  120
EDKLRNIWQH VAHKAFAGLK DQSERLQSEK ALAASVLEVH MEQKDIKEEC NKNQEHNEEV  180
SVESDKYPAP STPQLKQGIR LVDNGDCQDQ DQDQTNRSPE KECVDHDGES KFVETTCDNL  240
VVETTIEMNS AKSLEEGIDK PANDECGLDS KNDGKKRNEA SEHRSNSRGT KSSRRKIKVD  300
WTSELHKKFV QAVEQLGVDQ AIPSRILELM NVEGLTRHNV ASHLQKYRLQ RRHILPKESG  360
RKWPQTRHST PRSYYPQKPI VAYPPYHSNH ALSGSQVYPA WPPPHSYPPP PQMWGSPYYP  420
AWQSSESWMW NPYSGVQADA WGCPTVPPQP TFPQNVSQFQ GRDSMQSSQS IPKPSSDHFP  480
GDEVIDKVVK EAINKPWLPL PLGLKPPSTE SVIYELSKQG ISTVPPRING SRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-116	ARR-B family protein