PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985901.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 636aa MW: 69515 Da PI: 5.0132

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	248	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++far G+Ck G +CkF Hg XP_024985901.1 248 RPCMYFAR-GFCKNGTSCKFVHG 269 69****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MDTVEATKMV MSRIQKLDPE NASKIMGYIL IQDQGDNEMI RLAFGPENLL LSVIKQAKSF 60 LDISSNTSSA PSSTTPSLFI HRNSPQIVIP NNGFHHMNPP SPSSPWSLSG SFPDHHLHRG 120 SPRPVSYAAV VNGGGSSASS FYNNFNDPTD EYSTNNGLQV VSDQLSFFDE SKNVDFIDPM 180 VSPGGRSDSV LFPYPNDTSN WPMVSGNCGD AHHHHLHRRS CSVNDVFLGG GGGGNDDMGG 240 GGGFGGWRPC MYFARGFCKN GTSCKFVHGG FGDEIGLNPS SPTAVAGSPT GKIDSFDDLL 300 RIKAIQQQQQ RIAAMAGGGV PPFPFNRCMN FLNENPRSAA ALMMGDEFHK FSRCRPDRND 360 FAAMGLGNSN SSSRQIYLTF PADSTFKEED VSNYFRKHQQ QMERGDFSGC LSPTALESAE 420 PFDHIPFGAR MFNQEMILRR KLEERAELQQ AMEFQDRRLM NLQLSDLKNH HFHPNLSVSS 480 PTQSCAQINQ NLLFSSDGNN EELVSGAKIS THDSMNSLSD ESDPNVPPEV KVNDGNSGSN 540 GTGKEEISDQ NETDKHESSL EHILPDNLFA SPKKSAAIDN QTIFSTDMPE TDDSAATASS 600 LSAANDIQVL PTTSTPLEML ASLNSCYFQM PRKMEE

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MDTVEATKMV MSRIQKLDPE NASKIMGYIL IQDQGDNEMI RLAFGPENLL LSVIKQAKSF  60
LDISSNTSSA PSSTTPSLFI HRNSPQIVIP NNGFHHMNPP SPSSPWSLSG SFPDHHLHRG  120
SPRPVSYAAV VNGGGSSASS FYNNFNDPTD EYSTNNGLQV VSDQLSFFDE SKNVDFIDPM  180
VSPGGRSDSV LFPYPNDTSN WPMVSGNCGD AHHHHLHRRS CSVNDVFLGG GGGGNDDMGG  240
GGGFGGWRPC MYFARGFCKN GTSCKFVHGG FGDEIGLNPS SPTAVAGSPT GKIDSFDDLL  300
RIKAIQQQQQ RIAAMAGGGV PPFPFNRCMN FLNENPRSAA ALMMGDEFHK FSRCRPDRND  360
FAAMGLGNSN SSSRQIYLTF PADSTFKEED VSNYFRKHQQ QMERGDFSGC LSPTALESAE  420
PFDHIPFGAR MFNQEMILRR KLEERAELQQ AMEFQDRRLM NLQLSDLKNH HFHPNLSVSS  480
PTQSCAQINQ NLLFSSDGNN EELVSGAKIS THDSMNSLSD ESDPNVPPEV KVNDGNSGSN  540
GTGKEEISDQ NETDKHESSL EHILPDNLFA SPKKSAAIDN QTIFSTDMPE TDDSAATASS  600
LSAANDIQVL PTTSTPLEML ASLNSCYFQM PRKMEE