PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985978.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 331aa MW: 36994 Da PI: 6.1504

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.3	6.6e-28	124	184	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK + gs++prsYYrCt++ +C ++k+v+r++e p v+ei Y+g+H+++ XP_024985978.1 124 DDGYNWRKYGQKLILGSKYPRSYYRCTYRkakNCLATKQVQRTDEVPAVFEIAYKGKHTCN 184 8*************************99999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MDTACVSEQN TVIHELTQGI QMAKQLRSNL NSPQVRDFLI HNILSSYDKI LLVLKSADSA 60 GPPTPGLLDS PISGGSLQSG GFEFGQLVDD QLGQNVVSRK RKASTEWEDQ VRISTDDGLE 120 GKTDDGYNWR KYGQKLILGS KYPRSYYRCT YRKAKNCLAT KQVQRTDEVP AVFEIAYKGK 180 HTCNHGPTQS AAPSPASPEK HEIEPPHHYH HHHHHHHHQS SPNPSEVLSD FKANLSVNTT 240 DLGATDPSSF SFSPTPFGIL ESCQELLFPN HFDDELLQGY SPPFISPATS ELNLFSDWNS 300 LPMMDFPTDP EDTFSNYKFS NSYLLEGCSL R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	1e-44	WRKY family protein