PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986118.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family BBR-BPC
Protein Properties Length: 204aa    MW: 22723.9 Da    PI: 10.4616
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind217.89.5e-6731204125301
       GAGA_bind 125 elreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGal 219
                     ++++e  +ea p+++ a++++  +kkkk+ ++k+pk ++++ + + s+ skk+++k     + + e+k++d+v ++ ++D s++P+PvCsCtG+ 
  XP_024986118.1  31 NASQETYTEAVPVRSVAPTTEPDNKKKKELSSKTPKGPNKTTQSN-SSISKKSKRKTM--LKPNVERKNLDIVFDESNFDFSKVPPPVCSCTGVA 122
                     456777889999999999999999999999999999988776666.334434444433..567899***************************** PP

       GAGA_bind 220 rqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     rqC k G  GWqS+CC   +Sv+PLP+s+ r+gaR++grKmS+ga++klL kLa+eG++ls+pvDLk hWAk Gtn fvti+
  XP_024986118.1 123 RQCHKCGISGWQSSCCNSRMSVFPLPMSPWRPGARVGGRKMSHGAYRKLLCKLASEGHNLSHPVDLKAHWAKLGTNNFVTIK 204
                     *********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSETNDGRPF FDQFPWFQPW VTFPTSTTSS NASQETYTEA VPVRSVAPTT EPDNKKKKEL  60
SSKTPKGPNK TTQSNSSISK KSKRKTMLKP NVERKNLDIV FDESNFDFSK VPPPVCSCTG  120
VARQCHKCGI SGWQSSCCNS RMSVFPLPMS PWRPGARVGG RKMSHGAYRK LLCKLASEGH  180
NLSHPVDLKA HWAKLGTNNF VTIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15585KKKKELSSKTPKGPNKTTQSNSSISKKSKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.31e-53BBR-BPC family protein