PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986154.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 513aa MW: 56720.1 Da PI: 5.9985

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.8	5.7e-29	217	270	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_024986154.1 217 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 270 79*****************.******************************8 PP
2	Myb_DNA-binding	43.1	9.9e-14	219	269	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qky+ XP_024986154.1 219 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 269 678***********************************************7 PP
3	Response_reg	75.4	2.1e-25	38	146	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l++ +y e++ + +e l l+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + G XP_024986154.1 38 VLVVDDDPTCLMILEKMLKNCNY-EATICNRAEIGLSFLRENTngYDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKSVVMKGVTHG 130 89*******************.***********999999******************6654.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l++ XP_024986154.1 131 ACDYLIKPVRIEALRN 146 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MNRAIQRLMM PGSSSASWKS AAASAVGVPD QFPAGLRVLV VDDDPTCLMI LEKMLKNCNY 60 EATICNRAEI GLSFLRENTN GYDIVLSDVH MPDMDGFKLL EHIGLEMDLP VIMMSADDSK 120 SVVMKGVTHG ACDYLIKPVR IEALRNIWQH VVRRRKHEWK DFEPLTSADD ADQVPKPRED 180 LDVSSSANEG NNWKNAKRRK DDEDEAEEPD SSSSSKKPRV VWSVELHQQF VAAVNQLGID 240 KAVPKKILEL MNVPGLTREN VASHLQKYRL YLRRLSGSQH LGSIDGSFMG SPDMGYGSMS 300 SLNGIDLQAL AVGGQSLATL QAAVLGHPNN SKSPVSVPIL DQRNIFSFEN PKLKYQEVNT 360 QQLLHGIPTN IEPMQFAGLH QSRQHSFNNV NGRVLITTAG QSQCQNQSNS NHLPVLPNGI 420 LAHGSGSKVP RGGMIPSYNV PNDLNQMRTH DSGFESDLMK AKAESILLYP EQYNQEDLLT 480 AVLKQQQQQQ QGFGEAENEF GLNGYAVLDD LPV

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MNRAIQRLMM PGSSSASWKS AAASAVGVPD QFPAGLRVLV VDDDPTCLMI LEKMLKNCNY  60
EATICNRAEI GLSFLRENTN GYDIVLSDVH MPDMDGFKLL EHIGLEMDLP VIMMSADDSK  120
SVVMKGVTHG ACDYLIKPVR IEALRNIWQH VVRRRKHEWK DFEPLTSADD ADQVPKPRED  180
LDVSSSANEG NNWKNAKRRK DDEDEAEEPD SSSSSKKPRV VWSVELHQQF VAAVNQLGID  240
KAVPKKILEL MNVPGLTREN VASHLQKYRL YLRRLSGSQH LGSIDGSFMG SPDMGYGSMS  300
SLNGIDLQAL AVGGQSLATL QAAVLGHPNN SKSPVSVPIL DQRNIFSFEN PKLKYQEVNT  360
QQLLHGIPTN IEPMQFAGLH QSRQHSFNNV NGRVLITTAG QSQCQNQSNS NHLPVLPNGI  420
LAHGSGSKVP RGGMIPSYNV PNDLNQMRTH DSGFESDLMK AKAESILLYP EQYNQEDLLT  480
AVLKQQQQQQ QGFGEAENEF GLNGYAVLDD LPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-146	ARR-B family protein